Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0191
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42011| Best HMM Match : Cleaved_Adhesin (HMM E-Value=3.2)           42   3e-04
SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      29   2.8  
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   29   2.8  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         27   6.5  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_7891| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_42011| Best HMM Match : Cleaved_Adhesin (HMM E-Value=3.2)
          Length = 122

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = -1

Query: 442 QYVVDCSXIPHLPRVTFTIAGKRLHARGQRYVLR 341
           QY V+CS I  LP +TFTI GK+    G++Y+L+
Sbjct: 89  QYTVNCSAIDSLPDITFTIGGKKYVLTGKQYILK 122


>SB_13699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 410 PAASHFYHRRETTSRSRATIRAPGWHNSGHT 318
           P  SH+ HR  T   +  TI AP  H++ HT
Sbjct: 205 PRTSHYTHRMCTLRATYITIHAPYAHSTRHT 235



 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 419 HTAPAASHFYHRRETTSRSRATIRAPGWHNS 327
           H  P  SH+ HR  T   +  T+ AP  H +
Sbjct: 262 HYTPRTSHYTHRMRTLHATYITLHAPYAHTT 292


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 294 AGRAEAHGPAVNPGDVFIGKY--YTEFDAG 211
           AG+A A GP + P  V  GKY  +T F AG
Sbjct: 707 AGKAYAKGPGLAPTGVVAGKYTDFTVFTAG 736


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 251 SPGFTAGPWASARPAP*SRTGTPCAPNCAXPEHVSLPSSVK-SFPGDGKSDS 403
           SP   AGP ++  P   S +   C P+CA P  V  P  +   F G G  +S
Sbjct: 98  SPSRYAGP-SAYMPGAISPSSGICTPSCATPSSVMSPGPISPDFFGHGMVES 148


>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 359 PSSVKSFPGDGKSDSRQVRYXAAVHDVLPEAIGRCGHR 472
           PS+ KS P D KS  R  R    + D   +  G  GHR
Sbjct: 390 PSTAKSKPSDKKSSPRNDRGYRQIQDFRGQVGGYYGHR 427


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 236  LPMNTSPGFTAGPWASARPAP*SRTGTPCAPNCAXPEHVSLPSSVKSFPGDGK 394
            +P +   G    P +    +P S  G P +P    P + +LPS++ + P DGK
Sbjct: 1397 IPGSPGSGIPGSPGSGIPGSPGS--GIPGSPGSGIPGNPALPSAIPTLP-DGK 1446


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 445 GQYVVDCSXIPHLPRVTFTIAGKRLHARGQRYVLRXGTIRGTR 317
           G+     + + H+ R   T  G+RL+ +G+ Y  R  T+R  R
Sbjct: 302 GEIYTTRAKVMHMCRAKATRPGRRLYDQGEGYTTRAKTLRPGR 344


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 441 STSWTA-ASYRTCRESLLPSPGNDFTLEGN 355
           S  W A A Y  CR S++P+  +  T+EGN
Sbjct: 50  SLHWLACALYVACRRSVVPTVDSSGTVEGN 79


>SB_7891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 274 WPRCESWGRVHRQVLH 227
           WP CESW    +++LH
Sbjct: 29  WPDCESWELARKRLLH 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,128
Number of Sequences: 59808
Number of extensions: 282973
Number of successful extensions: 895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)