Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0190
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61880.1 68416.m06950 cytochrome P450, putative similar to cy...    28   2.6  
At2g46660.1 68415.m05822 cytochrome P450, putative similar to cy...    27   3.5  
At2g34750.1 68415.m04267 RNA polymerase I specific transcription...    26   8.0  

>At3g61880.1 68416.m06950 cytochrome P450, putative similar to
           cytochrome p450 SP:O48927 from [Arabidopsis thaliana]
          Length = 534

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 97  NNTLNMYIFMTLIYGMNLNYIMCIIYGDEYE 5
           +NT  +     LI   +LN +MC ++G EYE
Sbjct: 197 SNTKGLCFARDLIKTASLNNMMCSVFGKEYE 227


>At2g46660.1 68415.m05822 cytochrome P450, putative similar to
           cytochrome p450 (CYP78A9)(GI:17065344) {Arabidopsis
           thaliana}
          Length = 530

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = -3

Query: 175 NYFXSLEEYTISKTLRLFISSKL*-FINN-TLNMYIFMT-LIYGMNLNYIMCIIYGDEYE 5
           N+  S ++   ++T R  ISS++  F+   + N   F+  L+   +LN +MC ++G EYE
Sbjct: 171 NHLFSTKQIRRAETQRRVISSQMVEFLEKQSSNEPCFVRELLKTASLNNMMCSVFGQEYE 230


>At2g34750.1 68415.m04267 RNA polymerase I specific transcription
           initiation factor RRN3 family protein contains Pfam
           PF05327: RNA polymerase I specific transcription
           initiation factor RRN3;  similar to RRN3 (GI:7670100)
           [Homo sapiens] similar to RNA polymerase I specific
           transcription initiation factor RRN3 (Swiss-Prot:P36070)
           [Saccharomyces cerevisiae]
          Length = 613

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -1

Query: 270 DXLNYTTLLVLIXGIKIIWLYLN*V*EQSXNLIIXEV*KSTQFLKHCVCLLVQNF 106
           D L++  LL  +  +K+ W +   V +   NL+I     S ++L  C+ +LV NF
Sbjct: 87  DVLHHQKLLSALFRMKL-WDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSNF 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,412,570
Number of Sequences: 28952
Number of extensions: 88314
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)