Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0189
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.1  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   3.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.7  

>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 180 LSNILPRELARERLKLDLLTIXTPSPFCISHTKTSFPFTXTRPT 49
           LSN+L   L+ + +   ++ +   S FC  HT +    + TRP+
Sbjct: 245 LSNVLSTILSVQVIFATVIALIAISVFCFLHTSSKTTSSKTRPS 288


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 339 LNI*GTTGPRXVVGSTKXPTHGSSWT 416
           LN+ G T    ++G    P+HGSS T
Sbjct: 307 LNLTGNTQDSMIIGQQTYPSHGSSGT 332


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 269 AHYRYISGKLGLIAXAMLSTPYYFKYLRNDWTKXGGG 379
           A Y Y SG   LI   +     YF Y+ + W    GG
Sbjct: 526 APYLYQSGAFMLIGFVLACFGSYFMYINHGWCSYLGG 562


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 305 LNQVFQIYIYNVQHVVLQHWGKFRXE 228
           L+ V +I  Y    V+  HWGKF  E
Sbjct: 642 LSFVQKIIYYTTSEVIETHWGKFMGE 667


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 464  KGISELCYXKPXNWPQCSFREI*XINIHYXFILLKLC 574
            KG+++L + +P  +P CS       NI     +L  C
Sbjct: 890  KGLTQLLFDEPAKYPDCSGSRTLRDNISDVKAMLSAC 926


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,993
Number of Sequences: 5004
Number of extensions: 40704
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)