Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0189
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 105 PFCISHTKTSFPFTXTRPTIVIGLTPAVCAI 13
           P   S T T+ P T T+ TIV     + C++
Sbjct: 321 PVLSSSTTTTSPMTSTKSTIVRNHLNSTCSV 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 243  TPMLENNVLHIIDIYLENLV*SLXLCYQH 329
            +P  E+ VLH + + LE+    L LC  H
Sbjct: 1073 SPNDEDFVLHSLAVELEHGAAGLRLCLHH 1101


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -3

Query: 281 IYNVQHVVLQHWGKFRXEYVQGFPVKXTNRISTLSPIFF 165
           ++N  HV + +       Y++ F V   +  +   PIF+
Sbjct: 364 LHNFGHVAISYIHDPDHRYLESFGVMGDSATAMRDPIFY 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,230
Number of Sequences: 438
Number of extensions: 2965
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)