Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0186
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      41   1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    40   2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    39   6e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    38   0.001
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    38   0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    36   0.003
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    34   0.016
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    34   0.016
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    33   0.037
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    31   0.085
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.11 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    29   0.34 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    29   0.34 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.60 
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   1.4  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   5.6  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +1

Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
           S  V N+ Y  TPE+L+  F  CG V  + I  D++T   +GFA   FS
Sbjct: 56  SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
           V NL++  T +DL   F  CG++  I +P D  +   +GF    FS + + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +1

Query: 112 DGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
           D   + +V NL+  T  E+LR +F R G +  +Y+ +D+ T  ++GFA
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFA 246


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
           +  L + TT + LR  FE+ GEV D  + RD  T  SRGF    F +
Sbjct: 167 IGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
           V NL++ TT E +  +F +CGE+  I +  DR+T+   GF
Sbjct: 36  VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGF 75


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
           NLTY    +DL+ +F   G++  +++P D+ T   +GFA   F
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
           V NL +    E L R F  CG +  + I RD  T   +GFA   F   + + K
Sbjct: 274 VGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 33.9 bits (74), Expect = 0.016
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
           + NL +    +D+  VF   GE  DI + RD+ T +S+GFA
Sbjct: 35  IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFA 75


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.7 bits (71), Expect = 0.037
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
           V N+ +  T ED++ +FE  G++  +++ RD   R S+GF    + + ++ +
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISAR 394



 Score = 30.7 bits (66), Expect = 0.15
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
           V  L  R T  +L   FE+ G V D  I RD+ +  S+G A   F
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 142 LTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
           L+Y T   D+ R F R G +  I + R++ T +S G+A   F     LK
Sbjct: 107 LSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLK 155


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 112 DGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
           D  V   V NL   ++ E L+  F+R G+V  + IP D+ +   +G+A   F
Sbjct: 89  DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
           V NL + TT  DL+  F + G++  + +     T + +GF    F  + T  K
Sbjct: 232 VGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKKPW 297
           V  L   T  EDL  +F R G++    + RD+ T +S  +A   F +  +++K +
Sbjct: 248 VCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
           V NL ++T  +DL   F   G +    +  +  T E+RG+    FS
Sbjct: 9   VRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS 54


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
           NL  + T   L  +  + G V +I+IPRDR      GF    F
Sbjct: 17  NLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 217 PRDRYT---RESRGFASXGFSSVVTLKKPWTRWTD 312
           P+D+YT   R+++G    GF   V     WTR T+
Sbjct: 74  PKDKYTMFTRKTQGAGLQGFRKGVHKSPKWTRSTN 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,983
Number of Sequences: 5004
Number of extensions: 26798
Number of successful extensions: 87
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)