Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0186
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 79 2e-15
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 79 2e-15
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.002
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 39 0.002
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 39 0.002
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 39 0.002
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.002
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 38 0.006
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.015
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 36 0.015
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.019
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 36 0.019
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 35 0.044
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 35 0.044
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 33 0.10
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.14
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.24
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.24
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.31
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.31
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 31 0.41
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 31 0.41
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 31 0.72
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 31 0.72
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 2.2
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 29 2.2
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 3.9
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 3.9
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 28 3.9
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 28 3.9
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 28 3.9
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 28 3.9
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 3.9
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 27 8.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 27 8.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 8.9
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 79.4 bits (187), Expect = 2e-15
Identities = 32/58 (55%), Positives = 45/58 (77%)
Frame = +1
Query: 94 RPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
R P I+G+ S K+ NL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF F
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 279 DAEEALDTMDXRMXDRTELRVQMA 350
DAE ALD D ++ D ELRV +A
Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 79.4 bits (187), Expect = 2e-15
Identities = 32/58 (55%), Positives = 45/58 (77%)
Frame = +1
Query: 94 RPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
R P I+G+ S K+ NL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF F
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF 67
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 279 DAEEALDTMDXRMXDRTELRVQMA 350
DAE ALD D ++ D ELRV +A
Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLA 95
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
+ L+++TT E+LR F R GEV + + RD T+ +RGF F
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITF 93
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
+ L+ +T ED+++ FE G+V D + D+ T+ RGF F S
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS 184
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
+ L+++TT E+LR F R GEV + + RD T+ +RGF F
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITF 93
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
+ L+ +T ED+++ FE G+V D + D+ T+ RGF F S
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS 184
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 37.5 bits (83), Expect = 0.006
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
+ N+ + +T E++ F+ CG++ IP+D++T++ + FA F
Sbjct: 59 IGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 103
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
S V N ++TT +DL F + G V ++ I DR T RGFA F+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFT 53
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
S V N+ Y T E++ + F CG V + I DR++ +GFA F+
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFT 127
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
S V N+ +++T ++ F CG+V + IP+D++T + FA F + +++
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQ 101
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
NL Y T +DL+ +F++ GEV ++ + D+ T +GFA F
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 35.9 bits (79), Expect = 0.019
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
+ N+ + +T E++ F+ CG + IP+D++T++ + FA F
Sbjct: 65 IGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEF 109
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
V NL+ TT +DLR VF GE+ + DR + SRGF F+ +
Sbjct: 80 VFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLI 127
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 130 KVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
+V NL ++LR +F + G V I+I RD+ T +GFA F S
Sbjct: 179 RVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L Y T+ + L FE+ G++ + + DR T++SRG+
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGY 78
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ L+Y + D+ VF + GEV +I + RD+ T +S+GFA
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFA 82
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+R + + GE+ DI + RD T+ SRGF FS
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 34
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+R + + GE+ DI + RD T+ SRGF FS
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 34
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR FE+ G+V DI P D+ T+ R FA
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V ++ EDL F + GEV + DR SRGFA F++
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT 79
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR FE+ G+V DI P D+ T+ R FA
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V ++ EDL F + GEV + DR SRGFA F++
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTT 79
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L TT EDL +F R G++ + I RDR + +S +A F +
Sbjct: 245 VCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L TT EDL +F R G++ + I RDR + +S +A F +
Sbjct: 245 VCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L TT EDL +F R G++ + I RDR + +S +A F +
Sbjct: 176 VCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 222
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.72
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 112 DGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
DG V N+ +R DL+ +FE+ G V D+ I + R S+GF GF VT+++
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGF---GF---VTMER 201
Query: 292 P 294
P
Sbjct: 202 P 202
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 30.7 bits (66), Expect = 0.72
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 112 DGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
DG V N+ +R DL+ +FE+ G V D+ I + R S+GF GF VT+++
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGF---GF---VTMER 201
Query: 292 P 294
P
Sbjct: 202 P 202
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR +FE+ G++ + I +D+YT +G A
Sbjct: 43 KDLRHLFEQFGKIYEFTILKDKYTGMHKGCA 73
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V NL+Y T + + +F R G+V + + DR+ + GF
Sbjct: 41 VGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGF 80
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR +FE+ G++ + I +D+YT +G A
Sbjct: 43 KDLRHLFEQFGKIYEFTILKDKYTGMHKGCA 73
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V +L+ + E L+ F + GEV + + RD T++S+G+ F
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSF 183
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 65
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 75
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 178
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 146
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDRYTRESRG 249
D RR+FE+ G V I RD+ T+ S+G
Sbjct: 70 DCRRLFEKYGSVFSCNILRDKSTQASKG 97
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 157 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
T E++R +F GE+ + RD+ T +S G+
Sbjct: 54 TQEEVRSLFTSIGEIESCKLVRDKVTGQSLGY 85
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
T P DL F G V D+ I D T S+G F
Sbjct: 36 TRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
T P DL F G V D+ I D T S+G F
Sbjct: 181 TRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,482,078
Number of Sequences: 27780
Number of extensions: 157987
Number of successful extensions: 429
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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