Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0186
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 60 1e-09
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 60 1e-09
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 50 1e-06
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 50 1e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 49 2e-06
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 46 2e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 45 4e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 3e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 4e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 4e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 41 5e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 39 0.002
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 38 0.003
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.003
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 37 0.008
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.008
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 37 0.010
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.010
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.018
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 36 0.024
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 36 0.024
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.024
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.024
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.024
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 35 0.041
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.041
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.041
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 34 0.054
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 34 0.054
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 34 0.054
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.054
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 34 0.054
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 34 0.054
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 34 0.054
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 34 0.054
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 33 0.095
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 33 0.13
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 33 0.17
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 33 0.17
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 33 0.17
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.17
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.17
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.22
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 32 0.29
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.29
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.29
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 32 0.29
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 32 0.29
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 31 0.38
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 31 0.38
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 31 0.38
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.38
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 31 0.38
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 0.38
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 31 0.38
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 31 0.51
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 31 0.51
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.51
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 0.51
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.67
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 0.67
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 0.67
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 30 0.89
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 0.89
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 30 0.89
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 30 0.89
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 30 0.89
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 0.89
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 0.89
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 30 0.89
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 30 0.89
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 30 0.89
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 30 0.89
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 30 1.2
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 30 1.2
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 30 1.2
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 29 1.5
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 1.5
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 29 1.5
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 1.5
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 29 1.5
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.0
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 29 2.0
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 29 2.7
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 28 3.6
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 28 4.7
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 4.7
At3g52250.1 68416.m05742 myb family transcription factor contain... 28 4.7
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 27 6.2
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 27 6.2
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 27 6.2
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 27 6.2
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 27 6.2
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 27 6.2
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 27 6.2
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 27 6.2
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 27 6.2
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 27 6.2
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 27 8.3
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 YGRP-PPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+GR PP I S V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFA
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Frame = +1
Query: 88 YGRP-PPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+GR PP I S V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFA
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/48 (52%), Positives = 29/48 (60%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
S V NL + EDLRR FE+ G V DIY+PRD YT + RGF F
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
S V N+ PE+LR FER G V D+YIPRD Y+ + RGFA F
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
S V NL + EDLR+ FE+ G V DIY+PRD YT + RGF F
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ NL P DLR FER G + DIY+PR+ YT E RGF
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGF 90
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 44.8 bits (101), Expect = 4e-05
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVT 282
V NLT+RTT +DLRR FE+ G+V D + + Y S+G+ F V+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVS 65
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V NL+ TT + LR F G V D + RDRYT SRGF +SS
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
S V L++R T DL F + G+V D+++ D +TRESRGF SV
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSV 96
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
S V L++R T DL F + G+V D+++ D +TRESRGF SV
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSV 126
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/69 (28%), Positives = 36/69 (52%)
Frame = +1
Query: 79 KMSYGRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS 258
K S G P +DG + NL + TT D+R++F C + + + +++ T E +G+A
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAH 306
Query: 259 XGFSSVVTL 285
F V++
Sbjct: 307 VDFKDSVSV 315
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
++LR F +CGEV +++P DR T SRGFA +S
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 103 PRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVT 282
P+ + + V L+ RTT E LR F + GEV D + DR + S+GF GF T
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGF---GFVRYAT 106
Query: 283 LK 288
L+
Sbjct: 107 LE 108
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V + + D R FER GE+ D+Y+P+D +++ RG FSS
Sbjct: 95 VARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSS 141
Score = 36.7 bits (81), Expect = 0.010
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 88 YGRPPPRIDGMVSXK-VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXG 264
YGR P G+ + V L + +DLR F R G + D YIP+D RGF
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 265 FS 270
F+
Sbjct: 288 FA 289
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
V + + + L+ + G++ D + +DR T SRGF F+S K
Sbjct: 7 VLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAK 58
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V NL + T D+ +F G+V + + +DR+TR+SRG A
Sbjct: 61 VSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVA 101
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 37.1 bits (82), Expect = 0.008
Identities = 21/47 (44%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V ++Y T LR F + GEV D I DR T SRGFA F+S
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTS 84
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
+ L++ TT + L F +CG+V + I DR + S+GF F+S +K
Sbjct: 38 IGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQK 90
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ NL ++ P D++ VF G V D++IP++ T +GFA F+
Sbjct: 335 IRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFT 380
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T EDL+R F + G+V D I DR + SRGF F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T EDL+R F + G+V D I DR + SRGF F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T EDL+R F + G+V D I DR + SRGF F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T EDL+R F + G+V D I DR + SRGF F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
S V N+ Y TPE++++ F+ CG V + I D++ + +GFA F V
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEV 153
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 35.5 bits (78), Expect = 0.024
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V NL + T+ + L+R F GE+ ++ + +D + S+G+A F+S
Sbjct: 44 VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTS 90
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVT 282
V +L + T +++ +F + G V D+Y+ RD Y R+SRG +SS T
Sbjct: 215 VGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKET 263
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVT 282
V +L + T +++ +F + G V D+Y+ RD Y R+SRG +SS T
Sbjct: 215 VGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKYSSKET 263
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V +L + EDL++VF GEV ++ I ++ T++S+G A F++V K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V N+ Y TPE++++ F+ CG V + I D++ + +GFA F V +++
Sbjct: 96 VGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQE 147
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 34.7 bits (76), Expect = 0.041
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
S V N+ Y TPE+++ F+ CG V + I D++ + +GFA F V +++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQE 144
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 34.7 bits (76), Expect = 0.041
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
S V N+ Y TPE+++ F+ CG V + I D++ + +GFA F V +++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQE 144
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 34.3 bits (75), Expect = 0.054
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
+ + Y + LR F + GEV D + DR T SRGF F+S
Sbjct: 44 IGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTS 90
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 34.3 bits (75), Expect = 0.054
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V + + T DL VF + GE+ D+ + RD+ T +S+GFA
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFA 80
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 34.3 bits (75), Expect = 0.054
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 124 SXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
S +V NL+ T DL +F G V +Y+ D+ T SRGF F S
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVS 263
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 34.3 bits (75), Expect = 0.054
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 112 DGMVSXK-VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
DG ++ V ++ T D+R+VFE+ G V +I +P+D+ T E + + V
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKV 161
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 34.3 bits (75), Expect = 0.054
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXG 264
SY R P V L + T +++RR FE+ GE+ + I D+ T +S+G+
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
Query: 265 F 267
F
Sbjct: 65 F 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 34.3 bits (75), Expect = 0.054
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXG 264
SY R P V L + T +++RR FE+ GE+ + I D+ T +S+G+
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
Query: 265 F 267
F
Sbjct: 65 F 65
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 34.3 bits (75), Expect = 0.054
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = +1
Query: 28 NIVLFNLFDLS*ISILLKMSYG-RPPPRIDGMVSXK-----VXNLTYRTTPEDLRRVFER 189
NI++ NL + LK+++ +P P + + V NL++ T E L F
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 199
Query: 190 CGEVGDIYIPRDRYTRESRGFASXGFSS 273
CG+V + D T SRG+ +SS
Sbjct: 200 CGDVVGARVVFDGDTGRSRGYGFVCYSS 227
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.3 bits (75), Expect = 0.054
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L+ TT E+ + FER G D+ + D T RGF + S
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 170
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 33.5 bits (73), Expect = 0.095
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
LR F CGE+ ++ +P DR T S+G A FS
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS 454
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 103 PRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
P G + NL++ D+ F+ GEV D+ +R RGF F+S
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFAS 347
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V +++ TT E F + GEV D I DR T RGF F+ +K
Sbjct: 70 VGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
+ N+++ TT E L +F R GE+ I + D+ T+ GF F S
Sbjct: 38 IGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYS 84
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
V L++ T L++ F GEV + + DR T SRGF FS
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
V L++ T L++ F GEV + + DR T SRGF FS
Sbjct: 39 VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
V NL + +DLR+VFE G V + +PRD T +GF F+
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFA 333
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXG 264
SY R P V L + T +++RR F++ GE+ + I D+ T +S+G+
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVT 64
Query: 265 F 267
F
Sbjct: 65 F 65
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.22
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V +++ T + LR F GEV + RD+ T RGF FS L +
Sbjct: 10 VGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
EDLR + E GE+ ++ + +DR + +S+G+A F +
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKT 166
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V N+ T+ E L+ +F+R GEV I P + + GF
Sbjct: 296 VKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGF 335
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
E LR F + + D+ + RD++T SRGFA F SV
Sbjct: 472 EMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSV 509
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
V L+ ++T EDL ++ G + + + R++ + SRGFA F +V
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTV 349
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.29
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ L++ T+ + LR FE GE+ ++ I D+ ++ S+G+A
Sbjct: 286 ITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
V NL + L ++FE G V + + D+ T SRGF SSV
Sbjct: 95 VGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.9 bits (69), Expect = 0.29
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 SILLKMSYGRPPPRIDG-MVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 243
S L S PP G V L++RTT + LR FE+ G + + + D+
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP 117
Query: 244 RGFA 255
+GFA
Sbjct: 118 KGFA 121
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T E LR F G+V + I RDR T +RGF F+
Sbjct: 10 IGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T E LR F G+V + I RDR T +RGF F+
Sbjct: 10 IGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T E LR F G+V + I RDR T +RGF F+
Sbjct: 10 IGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 94 RPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
R P D V NL + L R+F G+V D + DR T SRGF
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGF 250
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V NL Y + L +FE+ G V + +R T +SRGF S+V +K
Sbjct: 117 VGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
V NL Y + L +FE+ G V + +R T +SRGF SSV
Sbjct: 154 VGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ N+ R + L + + G V D++IPRD+ T + +GFA
Sbjct: 11 IGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFA 51
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T + +RR FE+ GE+ + + D+ T S+G+ F
Sbjct: 26 VGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T+ + LR F GEV + I +DR T +RGF F+
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA 55
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T+ + LR F GEV + I +DR T +RGF F+
Sbjct: 10 IGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFA 55
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 109 IDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF--SSVV 279
+D V L TT + + F + GE+ D I +DR T + RGF + SSVV
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVV 96
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T E LR+ FE+ GE+ + + D+ T S+G+ F
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
N+ + +TPED+R +FE+ G V DI + + R +RG
Sbjct: 100 NVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRG 135
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.7 bits (66), Expect = 0.67
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
TT + F + GE+ D I RDR+T + RGF F+ + K
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 30.7 bits (66), Expect = 0.67
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
TT + F + GE+ D I RDR+T + RGF F+ + K
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 30.3 bits (65), Expect = 0.89
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
V NL + + LR++FE G V + +P D T + +GF GF V L+
Sbjct: 269 VGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGF---GFIQFVQLE 317
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ L++ T LR F G+V D + DR T SRGF F+
Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ L++ T LR F G+V D + DR T SRGF F+
Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
V NL++ L ++FE G V + + D+ T SRGF S+ ++
Sbjct: 103 VGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
V NL++ L ++FE G V + + D+ T SRGF S+ ++
Sbjct: 103 VGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T E L+ F GEV + I +DR T +RGF F+
Sbjct: 10 IGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA 55
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V L T D + FE+ G D+ + D T+ RGF + S ++K
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEK 164
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T E L+ F GEV + I +DR T +RGF F+
Sbjct: 10 IGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA 55
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V L T D + FE+ G D+ + D T+ RGF + S ++K
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEK 164
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L + TT E L VFE GE+ + + D+ T +++GF F +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L + TT E L VFE GE+ + + D+ T +++GF F +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + T + + R F GEV D I DR T S+GF
Sbjct: 48 VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGF 87
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T E LRR F++ G++ + + D+ T S+G+ F
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L + TT E+L+ FE GE+ + + D+ T ++GF
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGF 206
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
V L + T L F + G+V D I DR T SRGF F +K
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLK 288
V L + T L F + G+V D I DR T SRGF F +K
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIP 219
+Y PP + V NL T E+L++ F + GEV + IP
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP 269
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ +++ T E L+ F + G++ + I RDR T +RGF F+
Sbjct: 19 IGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
+ L + T+ LR FE+ G + + + D+++ SRGF F
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF 55
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V N++ P+ L F R GE+ + + D+ T +GFA + S+ + KK
Sbjct: 231 VSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK 283
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
+ +++ T LR F GEV + + R++ T RGF FS + +
Sbjct: 10 IGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 2.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 166 DLRRVFERCGEVGDIYIPRDR 228
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
+ L++ + L+ F GEV ++ I D+ + SRGF F+
Sbjct: 45 IGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFA 90
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V +++ +T E L + F + G+V + + D+ +GFA FSS
Sbjct: 25 VKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSS 71
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +1
Query: 109 IDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
+D V NL T E L +F G+V + R T +S GF FSS
Sbjct: 173 VDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSS 227
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T E L F+R GE+ + + DR T S+G+ F
Sbjct: 17 VGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF 61
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRD 225
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = +1
Query: 76 LKMSYGRPPPRIDGMVSXKVXNLTYR--TTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
LK ++ PRI + + N + + ED E CGE G I+ D + +G
Sbjct: 1063 LKFNHVVKKPRISHTLHNENSNTLHNENSNEEDDSCSEESCGETGPIHWTDDERSAFIQG 1122
Query: 250 FASXGFSSVVTLKKPWTRWTDEC 318
F+ G + + TR D+C
Sbjct: 1123 FSLFGKNFASISRYVGTRSPDQC 1145
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 91 GRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
GR I+ + NL Y ED++ +F GE+ + DR R S+G A +S
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYS 134
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 91 GRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
GR I+ + NL Y ED++ +F GE+ + DR R S+G A +S
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYS 70
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 91 GRPPPRIDGMVSXKVXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFS 270
GR I+ + NL Y ED++ +F GE+ + DR R S+G A +S
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEVVYS 136
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSV 276
V L + T E L FER GE+ + D T+ S+GF F V
Sbjct: 13 VAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V N+ P+ L F + GE+ + + D+YT +GF + S + K+
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR 301
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V N+ P+ L F + GE+ + + D+YT +GF + S + K+
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR 301
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSSVVTLKK 291
V N+ P+ L F + GE+ + + D+YT +GF + S + K+
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKR 301
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T E +++ FE+ GE+ + + D+ + S+G+ F
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T E +++ FE+ GE+ + + D+ + S+G+ F
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGF 267
V L + T E +++ FE+ GE+ + + D+ + S+G+ F
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 133 VXNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFASXGFSS 273
V L + + E L +F + G V ++Y+P+DR T + + + S
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRS 75
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,933,528
Number of Sequences: 28952
Number of extensions: 144717
Number of successful extensions: 467
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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