Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0185
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 41 1e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 4e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 38 0.001
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 38 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.005
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.016
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 33 0.021
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.028
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.037
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 31 0.085
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.60
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.0
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 1.4
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 3.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.6
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 7.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 7.3
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 9.7
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 40.7 bits (91), Expect = 1e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
S+ V N+ Y TPE+L+ F CG V + I D++T +GFA FS
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D +L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFA
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFA 246
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.1 bits (87), Expect = 4e-04
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
V NL++ T +DL F CG++ I +P D + +GF FS + + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V NL++ TT E + +F +CGE+ I + DR+T+ GF
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGF 75
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 37.5 bits (83), Expect = 0.001
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +1
Query: 97 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
P R DG + + L + TT + LR FE+ GEV D + RD T SRGF
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGF 206
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
NLTY +DL+ +F G++ +++P D+ T +GFA
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.016
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ NL + +D+ VF GE DI + RD+ T +S+GFA
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFA 75
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 33.5 bits (73), Expect = 0.021
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = +1
Query: 85 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*G 264
S P P+ D + V NL + E L R F CG + + I RD T +GFA
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 265 FSSVVTLKK 291
F + + K
Sbjct: 318 FKDTMGVDK 326
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.1 bits (72), Expect = 0.028
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V N+ + T ED++ +FE G++ +++ RD R S+GF
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGF 382
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V L R T +L FE+ G V D I RD+ + S+G A
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVA 284
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 32.7 bits (71), Expect = 0.037
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D V L V NL ++ E L+ F+R G+V + IP D+ + +G+A
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYA 136
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.085
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
D ++ + L+Y T D+ R F R G + I + R++ T +S G+A
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYA 144
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
L V NL + TT DL+ F + G++ + + T + +GF F + T K
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+L V NL ++T +DL F G + + + T E+RG+ FS
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS 54
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 282 AEEALDTMDGRMLDGRELRVQMA 350
AEEA+++++G +DGR + V A
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKKPW 297
T EDL +F R G++ + RD+ T +S +A F + +++K +
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
++ + NL + T L + + G V +I+IPRDR GF
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGF 54
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 142 DYLLLTRPCHRFVAEVFRNSF*VV*IFSSNQTN*II 35
D++ +T P H FV + RNS + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -3
Query: 360 DHIAPSEREVPCRPTFVRPSCPGLLQRHDARKTSRSESSTFPCVPISGNVDITNFSAPFE 181
D+ +PS+ E+P R +P P L R + SR+++ + +S D T+ S ++
Sbjct: 297 DNNSPSKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRS-QLNDLSAENDSTSNSTEYD 355
Query: 180 N 178
+
Sbjct: 356 D 356
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -2
Query: 262 LTKRILYFPLCTDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 92
+T + L D W+ L R + G+ L +GR D L +R ++E F
Sbjct: 194 ITLIFCFSALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 70 ILLKMSYGRPPPRIDGMVSLKVDNLTYRTT-PEDLRRVFERCGEVGDI 210
ILL+ + + D M S + + L +R PED+R FE G GDI
Sbjct: 856 ILLENGFQKFVQAFDDMESSR-EGLGFRELIPEDIRAHFEDVGLPGDI 902
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 276 DARKTSRSESSTFPCVPI-SGNVDITNFSAPFENAA 172
D +K + E S P PI G +D++NF F N A
Sbjct: 531 DWKKLAAKEISP-PFKPIVEGEIDVSNFDVEFTNKA 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,178
Number of Sequences: 5004
Number of extensions: 35508
Number of successful extensions: 122
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -