Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0185
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 84 7e-17
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 84 7e-17
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.003
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.003
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 38 0.005
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 38 0.005
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 38 0.005
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 38 0.005
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 36 0.015
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 36 0.015
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 36 0.019
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.077
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 33 0.10
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 33 0.10
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.14
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 33 0.14
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.14
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 32 0.31
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 32 0.31
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 31 0.55
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 31 0.55
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 31 0.72
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.72
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.72
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 30 0.95
Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 29 2.2
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 29 2.2
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 2.9
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 2.9
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 2.9
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.9
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 2.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 2.9
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 2.9
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 2.9
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 2.9
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 2.9
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 2.9
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z92847-2|CAE46677.1| 177|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z92847-1|CAE46676.1| 208|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68116-9|CAA92172.2| 101|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68116-4|CAA92171.2| 101|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68116-1|CAA92174.2| 101|Caenorhabditis elegans Hypothetical pr... 27 8.9
U41555-7|AAY55846.1| 101|Caenorhabditis elegans Nematode specif... 27 8.9
U41555-6|AAY55845.1| 101|Caenorhabditis elegans Nematode specif... 27 8.9
U41555-5|AAY55844.1| 101|Caenorhabditis elegans Nematode specif... 27 8.9
U41555-3|AAY55847.1| 101|Caenorhabditis elegans Nematode specif... 27 8.9
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 27 8.9
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 27 8.9
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 27 8.9
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 8.9
AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical ... 27 8.9
AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical ... 27 8.9
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 83.8 bits (198), Expect = 7e-17
Identities = 33/53 (62%), Positives = 46/53 (86%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQMA 350
DAE ALD DG+++DGRELRV +A
Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 83.8 bits (198), Expect = 7e-17
Identities = 33/53 (62%), Positives = 46/53 (86%)
Frame = +1
Query: 94 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQMA 350
DAE ALD DG+++DGRELRV +A
Sbjct: 72 DAEHALDRTDGKLVDGRELRVTLA 95
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L+++TT E+LR F R GEV + + RD T+ +RGF
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSS 273
+ L+ +T ED+++ FE G+V D + D+ T+ RGF F S
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS 184
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ L+++TT E+LR F R GEV + + RD T+ +RGF
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGF 88
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSS 273
+ L+ +T ED+++ FE G+V D + D+ T+ RGF F S
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS 184
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 37.9 bits (84), Expect = 0.005
Identities = 13/44 (29%), Positives = 29/44 (65%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ + N+ + +T E++ F+ CG++ IP+D++T++ + FA
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFA 99
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
V LT TT + +R + + GE+ DI + RD T+ SRGF FS
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 72
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N ++TT +DL F + G V ++ I DR T RGFA
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFA 48
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ Y T E++ + F CG V + I DR++ +GFA
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFA 122
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ + N+ + +T E++ F+ CG + IP+D++T++ + FA
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFA 105
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 35.9 bits (79), Expect = 0.019
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
S+ V N+ +++T ++ F CG+V + IP+D++T + FA
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFA 90
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 35.5 bits (78), Expect = 0.025
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 139 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
NL Y T +DL+ +F++ GEV ++ + D+ T +GFA
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFA 323
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.077
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
L V NL+ TT +DLR VF GE+ + DR + SRGF
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGF 119
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 130 KVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSS 273
+V NL ++LR +F + G V I+I RD+ T +GFA F S
Sbjct: 179 RVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V L Y T+ + L FE+ G++ + + DR T++SRG+
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGY 78
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
DG L V N+ +R DL+ +FE+ G V D+ I + R S+GF GF VT+++
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGF---GF---VTMER 201
Query: 292 P 294
P
Sbjct: 202 P 202
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+ L+Y + D+ VF + GEV +I + RD+ T +S+GFA
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFA 82
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 33.1 bits (72), Expect = 0.14
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
DG L V N+ +R DL+ +FE+ G V D+ I + R S+GF GF VT+++
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGF---GF---VTMER 201
Query: 292 P 294
P
Sbjct: 202 P 202
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR FE+ G+V DI P D+ T+ R FA
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V ++ EDL F + GEV + DR SRGFA
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFA 73
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 163 EDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
+DLR FE+ G+V DI P D+ T+ R FA
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFA 154
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
V ++ EDL F + GEV + DR SRGFA
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFA 73
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+R + + GE+ DI + RD T+ SRGF FS
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 34
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 169 LRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFS 270
+R + + GE+ DI + RD T+ SRGF FS
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFS 34
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 30.7 bits (66), Expect = 0.72
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Frame = -3
Query: 465 CANGCGYDCXSNYDGGNEXWTCACD---RNDSCMXMRGDHIA-PSEREVPCRPTFVRPSC 298
C NG DC + DG +TC CD ++C M I P C P F +C
Sbjct: 445 CVNG---DCQTTVDGITTNYTCTCDSGWTGENCDTMIDYCIPNPCSYNSTCSPYFKGFNC 501
Query: 297 PGLLQRHDAR-KTSRSESST 241
+ A TSRS ST
Sbjct: 502 TCITGLTGANCSTSRSNYST 521
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 100 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
P + + L V + +DLR +FE+ G++ + I +D+YT +G A
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCA 73
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 100 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
P + + L V + +DLR +FE+ G++ + I +D+YT +G A
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCA 73
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G++ + I RDR + +S +A
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYA 285
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G++ + I RDR + +S +A
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYA 285
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 154 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 255
TT EDL +F R G++ + I RDR + +S +A
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYA 216
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+L V NL+Y T + + +F R G+V + + DR+ + GF
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGF 80
>Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical
protein C43F9.5 protein.
Length = 248
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 465 CANGC--GYDCXSNYDGGNEXWTCACDR 388
C+NGC GY C SN G TCA R
Sbjct: 197 CSNGCPTGYSCNSNTGNGYCCATCASGR 224
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
DG L V N+ ++ DL +FE+ G V D+ I + R S+GF GF VT++
Sbjct: 97 DGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGF---GF---VTMQN 148
Query: 292 P 294
P
Sbjct: 149 P 149
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAS*GFSSVVTLKK 291
DG L V N+ ++ DL +FE+ G V D+ I + R S+GF GF VT++
Sbjct: 97 DGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGF---GF---VTMQN 148
Query: 292 P 294
P
Sbjct: 149 P 149
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 112 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
+ +L ++ L T E++R +F GE+ + RD+ T +S G+
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGY 85
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 65
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 75
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 178
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + LR F+ G+V D + RD T +S+G+
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGY 146
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 282 AEEALDTMDGRMLDGRELRVQMA 350
AE A + +DGR++ GR++RV+ A
Sbjct: 163 AESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 282 AEEALDTMDGRMLDGRELRVQMA 350
AE A + +DGR++ GR++RV+ A
Sbjct: 163 AESAKEAIDGRIIHGRQVRVRFA 185
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 121 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+ + V + + D RR+FE+ G V I RD+ T+ S+G
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKG 97
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRV 341
DAE ALDTM+ ++ GR +R+
Sbjct: 110 DAERALDTMNFEVIHGRPMRI 130
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRV 341
DAE ALDTM+ ++ GR +R+
Sbjct: 110 DAERALDTMNFEVIHGRPMRI 130
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 133 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 252
V +L+ + E L+ F + GEV + + RD T++S+G+
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGY 178
>Z92847-2|CAE46677.1| 177|Caenorhabditis elegans Hypothetical
protein H01G02.3b protein.
Length = 177
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 513 CDGNVPWNSLSQSESDCANGCGYDCXSNYDGGNEXWT--CACDR 388
CDG V + + + CG + + ++ WT CACD+
Sbjct: 44 CDGTVCLVGILRDSNQVIRTCGTNTLGCHKNEDDKWTDLCACDQ 87
>Z92847-1|CAE46676.1| 208|Caenorhabditis elegans Hypothetical
protein H01G02.3a protein.
Length = 208
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 513 CDGNVPWNSLSQSESDCANGCGYDCXSNYDGGNEXWT--CACDR 388
CDG V + + + CG + + ++ WT CACD+
Sbjct: 44 CDGTVCLVGILRDSNQVIRTCGTNTLGCHKNEDDKWTDLCACDQ 87
>Z68116-9|CAA92172.2| 101|Caenorhabditis elegans Hypothetical
protein F42F12.6 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>Z68116-4|CAA92171.2| 101|Caenorhabditis elegans Hypothetical
protein F42F12.7 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>Z68116-1|CAA92174.2| 101|Caenorhabditis elegans Hypothetical
protein F42F12.1 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>U41555-7|AAY55846.1| 101|Caenorhabditis elegans Nematode specific
peptide family,group c protein 6 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>U41555-6|AAY55845.1| 101|Caenorhabditis elegans Nematode specific
peptide family,group c protein 5 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>U41555-5|AAY55844.1| 101|Caenorhabditis elegans Nematode specific
peptide family,group c protein 4 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>U41555-3|AAY55847.1| 101|Caenorhabditis elegans Nematode specific
peptide family,group c protein 2 protein.
Length = 101
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 498 PWNSLS-QSESDCANGCGYDCXSNYDG 421
PW S + Q+ C N C ++C + YDG
Sbjct: 41 PWISFATQTNKTCYNLCVHNCAAVYDG 67
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQ 344
DAE+A+ DG DGR +RV+
Sbjct: 58 DAEDAVRARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 279 DAEEALDTMDGRMLDGRELRVQ 344
DAE+A+ DG DGR +RV+
Sbjct: 58 DAEDAVRARDGYEFDGRRIRVE 79
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+L + + T P DL F G V D+ I D T S+G
Sbjct: 26 TLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 67
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 124 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 249
+L + + T P DL F G V D+ I D T S+G
Sbjct: 171 TLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKG 212
>AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.4 protein.
Length = 141
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Frame = -3
Query: 459 NGCGYDCXSNYDGGNEXWTCACDRND--SCMXMRGDHIAPSEREVPCRPTFVRPS----- 301
N CG C N G + N+ SC G AP P +P F++PS
Sbjct: 48 NNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPSQCCNN 105
Query: 300 -----CPGLLQRHDARKTSRSESST 241
CP +RH++ + S+ T
Sbjct: 106 NNFSCCPFRFRRHNSAAAAASDEIT 130
>AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.5 protein.
Length = 141
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Frame = -3
Query: 459 NGCGYDCXSNYDGGNEXWTCACDRND--SCMXMRGDHIAPSEREVPCRPTFVRPS----- 301
N CG C N G + N+ SC G AP P +P F++PS
Sbjct: 48 NNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPSQCCNN 105
Query: 300 -----CPGLLQRHDARKTSRSESST 241
CP +RH++ + S+ T
Sbjct: 106 NNFSCCPFRFRRHNSAAAAASDEIT 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,622,239
Number of Sequences: 27780
Number of extensions: 206692
Number of successful extensions: 704
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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