Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0183
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    79   2e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    47   1e-06
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    40   1e-04
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    39   3e-04

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 79.0 bits (186), Expect = 2e-16
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = +3

Query: 66  MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
           MREIVHIQAGQ GNQ+GA FW   +  HG+     YHG S  Q ER+NVY+N A+GG
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGG 57



 Score = 34.7 bits (76), Expect = 0.005
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +1

Query: 223 EPPADXYXTPRXLVGLGXRHHSLXSSGXXEPIXRPDXXVFGQXGTGNKWAQG 378
           E     Y     LV L         SG    + RPD  ++GQ G GN WA+G
Sbjct: 53  EAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKG 104


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = +3

Query: 69  REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYY 218
           REI+ +QAGQ GNQIG++FW+     HGI P       +   ++R +V++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFF 52


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 39.9 bits (89), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = +3

Query: 66  MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXP 161
           MREI+ I  GQ G QIG   WE+    HGI P
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQP 32


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +3

Query: 66  MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASG 233
           MRE++ +  GQ G QIG   WE+    HGI P      +S  ++ + N Y N   G
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENS--EVHKNNSYLNDGFG 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,640
Number of Sequences: 5004
Number of extensions: 14869
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)