Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0183
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 92 2e-19
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 92 2e-19
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 91 2e-19
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 89 1e-18
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 89 1e-18
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 88 2e-18
03_01_0034 + 318432-318825,318902-319851 88 2e-18
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 87 6e-18
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 40 5e-04
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 40 5e-04
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 38 0.002
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 38 0.002
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 33 0.056
04_01_0072 - 784922-785567,785673-786406 29 1.6
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 28 2.1
03_02_0319 - 7421357-7421757,7421768-7421843,7424695-7424796,742... 28 2.1
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 26 8.6
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 26 8.6
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 26 8.6
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 91.9 bits (218), Expect = 2e-19
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI T Y GDS LQLERINVYYN ASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGG 57
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 91.9 bits (218), Expect = 2e-19
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI T Y GDS LQLERINVYYN ASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGG 57
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 91.5 bits (217), Expect = 2e-19
Identities = 41/57 (71%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HG+ T Y GDS LQLERINVYYN ASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQLERINVYYNEASGG 57
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 89.0 bits (211), Expect = 1e-18
Identities = 40/58 (68%), Positives = 44/58 (75%)
Frame = +3
Query: 63 KMREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
KMREI+HIQ GQ GNQIG+KFWE+ HGI PT Y G S LQLER+NVYYN AS G
Sbjct: 180 KMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCG 237
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
+G I RPD VFGQ G GN WA+G
Sbjct: 258 TGPYGQIFRPDNFVFGQSGAGNNWAKG 284
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 89.0 bits (211), Expect = 1e-18
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI PT Y G+S LQLER+NVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCG 57
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
+G I RPD VFGQ G GN WA+G
Sbjct: 78 TGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 88.2 bits (209), Expect = 2e-18
Identities = 39/57 (68%), Positives = 43/57 (75%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HG+ PT Y G S QLERINVY+N ASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQQLERINVYFNEASGG 57
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPIGGIFRPDNFVFGQSGAGNNWAKG 104
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 88.2 bits (209), Expect = 2e-18
Identities = 40/57 (70%), Positives = 43/57 (75%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI T Y GDS LQLER+NVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDSDLQLERVNVYYNEASCG 57
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPYGHIFRPDNFVFGQSGAGNNWAKG 104
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 86.6 bits (205), Expect = 6e-18
Identities = 39/57 (68%), Positives = 43/57 (75%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIG+KFWE+ HGI PT Y G S LQLER+NVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCG 57
Score = 36.7 bits (81), Expect = 0.006
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
+G I RPD VFGQ G GN WA+G
Sbjct: 78 TGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 40.3 bits (90), Expect = 5e-04
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQL--ERINVYYNGASGG 236
MREI+ I GQ G Q+G WE+ HGI P D+ + + + N +++ G
Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAG 59
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 40.3 bits (90), Expect = 5e-04
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
REI+ IQ GQ GNQIG +FW+ HGI
Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGI 31
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGD 182
MRE + I GQ G Q+G WE+ HGI P GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXP 161
MREI+ I GQ G Q+G WE+ HGI P
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQP 32
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 33.5 bits (73), Expect = 0.056
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
MRE + I GQ G Q+G WE+ HGI
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGI 30
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 159 PTXAYHGDSXL--QLERINVYYNGASGGXVXDPAHXRRTWXPAP 284
PT + H + + ++ R NV+YN + DPA W P+P
Sbjct: 135 PTLSPHFEVFMIPEIRRSNVWYNMLNSDDKLDPAIEELEWPPSP 178
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
MRE V +Q G N +G+ FW G+
Sbjct: 1 MREAVTVQVGGFANYVGSHFWNFQDELLGL 30
>03_02_0319 -
7421357-7421757,7421768-7421843,7424695-7424796,
7424911-7424982
Length = 216
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
MRE V +Q G N +G+ FW G+
Sbjct: 1 MREAVTVQVGGFANYVGSHFWNFQDELLGL 30
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3
Query: 341 KTKXSGRXIGSXXPELXRLWCRXPSPTXMRGVXYXSAGGSIV 216
K K G S LWC+ T +GV Y +GG V
Sbjct: 256 KPKGQGTFRWSDGGMYIGLWCQESGETQGKGVYYPPSGGPAV 297
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3
Query: 341 KTKXSGRXIGSXXPELXRLWCRXPSPTXMRGVXYXSAGGSIV 216
K K G S LWC+ T +GV Y +GG V
Sbjct: 259 KPKGQGTFRWSDGGMYIGLWCQESGETQGKGVYYPPSGGPAV 300
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3
Query: 341 KTKXSGRXIGSXXPELXRLWCRXPSPTXMRGVXYXSAGGSIV 216
K K G S LWC+ T +GV Y +GG V
Sbjct: 257 KPKGQGTFRWSDGGMYIGLWCQESGETQGKGVYYPPSGGPAV 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,015
Number of Sequences: 37544
Number of extensions: 125808
Number of successful extensions: 205
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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