Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0183
(379 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 105 2e-23
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 101 3e-22
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 99 1e-21
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 9e-04
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 38 0.003
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 37 0.005
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 37 0.006
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 36 0.011
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.014
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 36 0.014
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 35 0.019
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.019
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.033
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.23
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 26 8.8
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 105 bits (251), Expect = 2e-23
Identities = 49/65 (75%), Positives = 51/65 (78%)
Frame = +3
Query: 42 YSSHK*NKMREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYN 221
YSS KMREIVH QAGQ GNQIGAKFWE+ S HGI PT YHGDS LQLERINVYYN
Sbjct: 206 YSSKLLFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYN 265
Query: 222 GASGG 236
A+GG
Sbjct: 266 EATGG 270
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 291 SGPFGQIFRPDNFVFGQSGAGNNWAKG 317
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 101 bits (241), Expect = 3e-22
Identities = 45/57 (78%), Positives = 47/57 (82%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREIVH QAGQ GNQIGAKFWE+ S HGI PT YHGDS LQLERINVYYN A+GG
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG 57
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 101 bits (241), Expect = 3e-22
Identities = 45/57 (78%), Positives = 47/57 (82%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREIVH QAGQ GNQIGAKFWE+ S HGI PT YHGDS LQLERINVYYN A+GG
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG 57
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 98.7 bits (235), Expect = 1e-21
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREIV +QAGQ GNQIGAKFWE+ S HGI PT YHGDS LQLERINVYYN A+GG
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGG 57
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 39.5 bits (88), Expect = 9e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQ--LERINVYYNGASGG 236
MRE + + GQ G QIG WE+ HGI P D + + N +++ GG
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIDGGDDSFNTFFSETGGG 59
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 23 SGPFGQIFRPDNFVFGQSGAGNNWAKG 49
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
MRE + I GQ G QIG WE+ HGI P D +
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 42
Score = 35.1 bits (77), Expect = 0.019
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE + I GQ G QIG WE+ HGI P D +
Sbjct: 435 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 475
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 36.7 bits (81), Expect = 0.006
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXP 161
MRE + I GQ G QIG WE+ HGI P
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQP 32
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXP 161
MRE + I GQ G QIG WE+ HGI P
Sbjct: 196 MRECLSIHVGQAGVQIGNACWELYCLEHGIQP 227
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
MRE + I GQ G Q+G WE+ HGI P D +
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTI 42
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 35.5 bits (78), Expect = 0.014
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
MRE + + GQ G Q+G WE+ HGI P D +
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTI 42
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 35.5 bits (78), Expect = 0.014
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
+RE + I GQ G QIG WE+ HGI P D +
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 627
Score = 35.1 bits (77), Expect = 0.019
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE + I GQ G QIG WE+ HGI P D +
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 554
Score = 34.7 bits (76), Expect = 0.025
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE + + GQ G QIG WE+ HGI P D +
Sbjct: 66 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 106
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 35.1 bits (77), Expect = 0.019
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE + I GQ G QIG WE+ HGI P D +
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 41
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 35.1 bits (77), Expect = 0.019
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE + I GQ G QIG WE+ HGI P D +
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTI 413
Score = 33.5 bits (73), Expect = 0.058
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE + + GQ G Q+G WE+ HGI P D +
Sbjct: 806 RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTI 846
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 34.3 bits (75), Expect = 0.033
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXL 191
RE V I GQ G Q+G WE+ HGI P D +
Sbjct: 420 RECVSIHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTI 460
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 31.5 bits (68), Expect = 0.23
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 123 FWEIXSXXHGIXPTXAYHG-DSXLQLERINVYYN 221
FWE+ + HGI P S +Q +R+NVY++
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFD 34
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 322 RPDXXVFGQXGTGNKWAQG 378
RPD V Q G N WA+G
Sbjct: 42 RPDNFVNSQSGAANNWAKG 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,076,620
Number of Sequences: 59808
Number of extensions: 127633
Number of successful extensions: 138
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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