Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0183
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 91 2e-19
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 91 2e-19
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 90 5e-19
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 87 3e-18
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 87 3e-18
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 87 4e-18
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 86 8e-18
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 85 1e-17
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 85 1e-17
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 43 8e-05
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 40 4e-04
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 40 4e-04
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 40 7e-04
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 40 7e-04
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 38 0.002
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 38 0.002
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 36 0.009
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 36 0.009
At4g37190.1 68417.m05265 expressed protein 31 0.19
At1g68390.1 68414.m07813 expressed protein contains Pfam profile... 26 9.6
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 91.5 bits (217), Expect = 2e-19
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI PT Y GDS LQLERINVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCG 57
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG RPD VFGQ G GN WA+G
Sbjct: 78 SGPYGQTFRPDNFVFGQSGAGNNWAKG 104
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 91.5 bits (217), Expect = 2e-19
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI PT Y GDS LQLERINVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCG 57
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG RPD VFGQ G GN WA+G
Sbjct: 78 SGPYGQTFRPDNFVFGQSGAGNNWAKG 104
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 89.8 bits (213), Expect = 5e-19
Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDS-XLQLERINVYYNGASGG 236
MREI+H+Q GQ GNQIG+KFWE+ HG+ PT Y+GDS LQLERINVYYN ASGG
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGG 58
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 79 SGPYGQIFRPDNFVFGQSGAGNNWAKG 105
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 87.4 bits (207), Expect = 3e-18
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI T Y GDS LQLERI+VY+N ASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGG 57
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 87.4 bits (207), Expect = 3e-18
Identities = 39/57 (68%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIG+KFWE+ HGI PT Y G+S LQLER+NVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCG 57
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
+G I RPD VFGQ G GN WA+G
Sbjct: 78 TGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 87.0 bits (206), Expect = 4e-18
Identities = 39/57 (68%), Positives = 44/57 (77%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIG+KFWE+ + HGI T Y GDS LQLER+NVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCG 57
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 85.8 bits (203), Expect = 8e-18
Identities = 38/57 (66%), Positives = 43/57 (75%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI T Y G++ LQLER+NVYYN AS G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCG 57
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPYGQIFRPDNFVFGQSGAGNNWAKG 104
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 85.4 bits (202), Expect = 1e-17
Identities = 40/58 (68%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGD-SXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIG+KFWE+ HGI T Y GD + LQLERINVYYN ASGG
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGG 58
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 79 SGPFGQIFRPDNFVFGQSGAGNNWAKG 105
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 85.0 bits (201), Expect = 1e-17
Identities = 39/57 (68%), Positives = 43/57 (75%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQLERINVYYNGASGG 236
MREI+HIQ GQ GNQIGAKFWE+ HGI T GD+ LQLERINVY+N ASGG
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGG 57
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 298 SGXXEPIXRPDXXVFGQXGTGNKWAQG 378
SG I RPD VFGQ G GN WA+G
Sbjct: 78 SGPFGQIFRPDNFVFGQSGAGNNWAKG 104
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 42.7 bits (96), Expect = 8e-05
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQL--ERINVYYNGASGG 236
MREI+ I GQ G Q+G WE+ HGI P DS + + N +++ S G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSG 59
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQL--ERINVYYNGASGG 236
MREI+ I GQ G Q+G WE+ HGI P D+ + + + N +++ G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGDSXLQL--ERINVYYNGASGG 236
MREI+ I GQ G Q+G WE+ HGI P D+ + + + N +++ G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAG 59
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 39.5 bits (88), Expect = 7e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
REI+ +Q GQ GNQIG +FW+ HGI
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGI 31
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 39.5 bits (88), Expect = 7e-04
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 69 REIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
REI+ +Q GQ GNQIG +FW+ HGI
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGI 31
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGD 182
MRE + I GQ G Q+G WE+ HGI P GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXPTXAYHGD 182
MRE + I GQ G Q+G WE+ HGI P GD
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXP 161
MRE + I GQ G Q+G WE+ HGI P
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQP 32
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGIXP 161
MRE + I GQ G Q+G WE+ HGI P
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQP 32
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 66 MREIVHIQAGQXGNQIGAKFWEIXSXXHGI 155
MREIV IQ G+ N +G+ FW G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At1g68390.1 68414.m07813 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function,
DUF266; expression supported by MPSS
Length = 408
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 80 TYPSWSXRQPDRS*VLGDXLRRXRHXPHXCLPWGLXLAVGAHQCIL 217
+YPS++ P+ D + R RH P + WG V A Q +L
Sbjct: 172 SYPSYNQSDPE------DSVFRGRHIPSKRVDWGYVNMVEAEQRLL 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,335,797
Number of Sequences: 28952
Number of extensions: 87735
Number of successful extensions: 140
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -