Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0178
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   6.3  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   6.3  

>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 302 LHNLSSANVTPTYVHNLPXGIHLXNIARKFXH 207
           L+  +  N T  YVH LP  I    +   F H
Sbjct: 167 LNQFTDPNNTAVYVHQLPENITTQELRSYFLH 198


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 377 PPFPPTIDWSPGXGTFRKI*SRLXXLHNLSSANVTPTYV 261
           PP PP+++ S G    + I S+   +   +  + TP Y+
Sbjct: 157 PPIPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,431
Number of Sequences: 5004
Number of extensions: 31451
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)