Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0178
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0014 - 103808-103873,103925-104248                               28   3.6  
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    28   3.6  
01_05_0013 - 17156017-17157647,17157977-17158144,17160064-171601...    27   6.3  
08_02_1307 + 26017525-26017784,26018746-26018857,26018906-26018998     27   8.4  

>07_01_0014 - 103808-103873,103925-104248
          Length = 129

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 389 GFRSPPFPPTIDWSPGXGT 333
           G RSP FPP I W  G  T
Sbjct: 65  GIRSPSFPPQIRWRGGAST 83


>01_05_0687 +
           24288648-24292746,24293737-24293844,24294333-24294442,
           24295208-24295282
          Length = 1463

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 416 PRRSCGGTPGFRSPPFPPTIDWSPGXGT 333
           P+   GGTPG   PP PP+   S   GT
Sbjct: 73  PQPPIGGTPGAAGPPAPPSFFPSLELGT 100


>01_05_0013 -
           17156017-17157647,17157977-17158144,17160064-17160113,
           17160796-17160833,17161102-17161212
          Length = 665

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 457 ASFSFTLNILMLRALDEAAEGPRDFAARHFPPQ---STGHRXGELFVKFN 317
           +S   T++ L LRA+ E    P     RH  P    STG   G ++ +FN
Sbjct: 299 SSIMSTIDELRLRAVPEGGAAPASCDVRHDVPAVVFSTGGYTGNVYHEFN 348


>08_02_1307 + 26017525-26017784,26018746-26018857,26018906-26018998
          Length = 154

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 299 EXSKVEIKFYEKFPXPVTSRLWG 367
           E  K+ ++F EK     TSRLWG
Sbjct: 105 ELQKLAVRFEEKIYTGATSRLWG 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,268
Number of Sequences: 37544
Number of extensions: 255381
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)