Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0178
         (499 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    27   0.47 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   3.3  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   7.6  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 410 RSCGGTPGFRSPPFPPTIDWSPGXGTFRKI*SRLXXLHNLSSANVTPTYVHN 255
           RSC    G   PP PPTI + P       +      L N    + +PT++HN
Sbjct: 375 RSCNSL-GDHIPPLPPTIAFDPSVLLDHHLLDSSESL-NTCRLHGSPTHLHN 424


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 434 HSYVTCPRRSCGGTPGFRSPPFPP 363
           ++ +T    SC  TP FRSPP PP
Sbjct: 313 NALLTSALLSC--TPIFRSPPNPP 334


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 398 GTPGFRSPPFPPTIDWSPG 342
           GT G    P PP +D  PG
Sbjct: 391 GTTGLPGIPGPPCVDGLPG 409


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,946
Number of Sequences: 2352
Number of extensions: 9371
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44400195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)