Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0178
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical pr...    31   0.61 
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    28   4.3  
Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81104-8|CAL49439.1|   75|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    27   7.6  

>U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical
           protein C06G1.4 protein.
          Length = 641

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 334 VPXPGDQSIVGGNGGLRNPGVPP 402
           VP P D  + GG GG+RN GV P
Sbjct: 252 VPPPMDMHMGGGMGGMRNMGVAP 274


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 328 RKVPXPGD-QSIVGGNGGLRNPGVPPQLR 411
           R  P PG  Q   G +GG  NPG P Q+R
Sbjct: 179 RGPPGPGGPQGEAGEDGGAGNPGTPGQVR 207


>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -3

Query: 434 HSYVTCPRRSC-GGTPGFRSPPFPPTIDWSPG 342
           H  V  P + C GG PG   PP  P  D  PG
Sbjct: 142 HPVVPTPCKPCPGGRPGPPGPPGRPGSDGQPG 173


>Z81104-8|CAL49439.1|   75|Caenorhabditis elegans Hypothetical
           protein M199.9 protein.
          Length = 75

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 446 FHAEHSYVTCPRRSCGGTPGFRSPPFPPTIDWSPG 342
           +  +  Y T   +   G  G+R PP PP +  +PG
Sbjct: 37  YEYQMDYETYDLKDYRGPRGYRGPPGPPGLPGAPG 71


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +1

Query: 334 VPXPGDQSIV----GGNGGLRNPGVPPQ 405
           VP PG Q  +    G   G+R PGVPPQ
Sbjct: 527 VPGPGPQGYMNPQMGMQMGMRAPGVPPQ 554


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 416 PRRSCGGTPGFRSPPFPPTIDWSPG 342
           P+  C   PG   PP PP  D  PG
Sbjct: 137 PQCPCTAAPGLGGPPGPPGQDGIPG 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,266
Number of Sequences: 27780
Number of extensions: 197796
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)