Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0178
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containi...    28   4.0  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    27   7.0  

>At2g29760.1 68415.m03616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 317 IKFYEKFPXPVTSRLWGEMAG-CEIPGSL 400
           +KF E  P P ++ +WG + G C+I  +L
Sbjct: 522 VKFIEAMPIPPSTSVWGALLGACKIHANL 550


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 386 FRSPPFPPTIDWSPGXGTFRKI*SRLXXLHNLSSANVTPTYVHNLPXGI 240
           FR  P    +D S G  + RK+ +++  L +L   +++ TY+  LP G+
Sbjct: 559 FRCIPMLVVLDLS-GNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGL 606


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,920,013
Number of Sequences: 28952
Number of extensions: 182911
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)