Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0177
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0128 - 10437407-10438049,10438097-10438272                       29   1.5  
09_04_0500 - 18120287-18122233                                         29   1.5  
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617...    29   2.0  
10_08_0520 - 18495118-18498237                                         29   2.6  
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389...    29   2.6  
01_01_1127 + 8930593-8932681,8932812-8933401                           29   2.6  
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867...    28   4.5  

>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
           S S  +  STTCRT  RA   +   C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164


>09_04_0500 - 18120287-18122233
          Length = 648

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 269 AVSVPERRSSDEYGRXARVELRSASWQR 352
           AV+V +R  S EY   +R E RS SW+R
Sbjct: 2   AVAVLDRSFSSEYPASSRTEGRSCSWKR 29


>06_01_0816 -
           6171189-6171255,6171277-6171441,6172037-6172618,
           6173451-6173761
          Length = 374

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 76  GLVVLGPEDWSEISVLNWSQKIS 8
           G VV GP  W EI +  WSQ+ S
Sbjct: 42  GRVVAGPYCWQEIDIQEWSQQQS 64


>10_08_0520 - 18495118-18498237
          Length = 1039

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 317 ARVELRSASWQRGLQELWRXFAVVVXMLGNVGDGRXIL 430
           AR+ L  A  + G + +W   A+V   LGNV + R +L
Sbjct: 752 ARILLSKARERGGTERVWMKSAIVERELGNVDEERKLL 789


>01_05_0329 -
           21037980-21038378,21038517-21038737,21038827-21038905,
           21039002-21039071,21039144-21039255,21039359-21039398,
           21039482-21039676,21039925-21040044,21040684-21041106,
           21042386-21042928
          Length = 733

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 390 TTTANXLQSS*RPRCHDAERSSTRAXRPYSSEERR 286
           T T +   +S RPR  D+E  ++    PYSSE++R
Sbjct: 444 TITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 317 ARVELRSASWQRGLQELWRXFAVVVXMLGNVGDGRXIL 430
           AR+ L  A  + G + +W   A+V   LGNV + R +L
Sbjct: 657 ARILLSKARERGGTERVWMKSAIVERELGNVDEERKLL 694


>08_02_0157 -
           13385589-13385675,13386187-13386357,13386572-13386792,
           13390090-13390240,13390682-13390726,13391121-13391330
          Length = 294

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
           WV  L + +TTASN  D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,829,565
Number of Sequences: 37544
Number of extensions: 188593
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)