Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0177
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)              30   1.1  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   6.1  

>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
          Length = 207

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 358 KTALPRRGAKLNARXTSILVRGASLGNGDSVTSNXHRSSH 239
           KTA+PRRG K      S++ R   + + + +TS  HR  H
Sbjct: 112 KTAVPRRGVK-GLPLNSVIRRLVDVHSSEGMTSARHRKRH 150


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 228 RLTDHLTTASNGSDSSSRGTEYST 157
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,397
Number of Sequences: 59808
Number of extensions: 212168
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)