Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0177
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29060.1 68415.m03532 scarecrow transcription factor family p...    29   1.6  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    28   2.9  
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom...    28   2.9  
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom...    28   2.9  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   3.8  
At3g55630.3 68416.m06181 dihydrofolate synthetase/folylpolygluta...    28   3.8  
At3g55630.2 68416.m06180 dihydrofolate synthetase/folylpolygluta...    28   3.8  
At3g55630.1 68416.m06179 dihydrofolate synthetase/folylpolygluta...    28   3.8  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    27   5.0  
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof...    27   8.8  
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein...    27   8.8  
At4g09960.2 68417.m01630 MADS-box protein (AGL11)                      27   8.8  

>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 239 MRTAMAV*SHAVSVPERRSSDEYGRXARVELRSASWQRGLQELWRXFA 382
           +RT +   + AVS+ +RR++DE    +R+   S+S+  G + L   FA
Sbjct: 318 LRTMLVSCAQAVSINDRRTADEL--LSRIRQHSSSYGDGTERLAHYFA 363


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
           +W + DH+T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 466 TRKRKHRSNSELQYXAAIADIS 401
           TR R H+S S ++Y AA  D+S
Sbjct: 177 TRNRSHQSTSPMEYSAASTDVS 198


>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 930

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 466 TRKRKHRSNSELQYXAAIADIS 401
           TR R H+S S ++Y AA  D+S
Sbjct: 177 TRNRSHQSTSPMEYSAASTDVS 198


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  SIPKFHSSLQDLKQPSLQEPRCLATRV 108
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At3g55630.3 68416.m06181 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS4)
           nearly identical to folylpolyglutamate-dihydrofolate
           synthetase [Arabidopsis thaliana] GI:17976761
          Length = 492

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 AVSVPERRSSDEYGRXARVELR--SASWQRGLQELWRXFA 382
           AV VP     ++ G    V  R  S SWQ GLQ +W   A
Sbjct: 388 AVFVPNVSVYNQVGSSTNVGTRVESMSWQFGLQRIWESLA 427


>At3g55630.2 68416.m06180 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS4)
           nearly identical to folylpolyglutamate-dihydrofolate
           synthetase [Arabidopsis thaliana] GI:17976761
          Length = 491

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 AVSVPERRSSDEYGRXARVELR--SASWQRGLQELWRXFA 382
           AV VP     ++ G    V  R  S SWQ GLQ +W   A
Sbjct: 387 AVFVPNVSVYNQVGSSTNVGTRVESMSWQFGLQRIWESLA 426


>At3g55630.1 68416.m06179 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS4)
           nearly identical to folylpolyglutamate-dihydrofolate
           synthetase [Arabidopsis thaliana] GI:17976761
          Length = 470

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 269 AVSVPERRSSDEYGRXARVELR--SASWQRGLQELWRXFA 382
           AV VP     ++ G    V  R  S SWQ GLQ +W   A
Sbjct: 366 AVFVPNVSVYNQVGSSTNVGTRVESMSWQFGLQRIWESLA 405


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 317 ARVELRSASWQRGLQELWRXFAVVVXMLGNVGDGRXIL 430
           AR+ L  A  + G + +W   A+V   LGNV + R +L
Sbjct: 746 ARMLLAKARERGGTERVWMKSAIVERELGNVEEERRLL 783


>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 493

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 126
           K S  S I  FH   Q+ ++P ++ PR L  + +  A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483


>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           nap gene, Arabidopsis thaliana, gb:AJ222713
          Length = 341

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 231 WRLTDHLTTASNGSDSSSRGTEY 163
           W + D L T   G++ SSRG  Y
Sbjct: 286 WAMMDRLVTCHMGNEDSSRGITY 308


>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
          Length = 216

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/83 (21%), Positives = 34/83 (40%)
 Frame = -2

Query: 481 ISVYLTRKRKHRSNSELQYXAAIADISQHXNHDXEXPPELLKTALPRRGAKLNARXTSIL 302
           IS   ++K     N  +     +A++ ++  H  +        A+    ++ N    SI+
Sbjct: 135 ISRIRSKKEIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALASR-NYFAHSIM 193

Query: 301 VRGASLGNGDSVTSNXHRSSHLG 233
             G+  GNG S +    +  HLG
Sbjct: 194 TAGSGSGNGGSYSDPDKKILHLG 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,154,567
Number of Sequences: 28952
Number of extensions: 139262
Number of successful extensions: 375
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)