Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0175
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    65   5e-12
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    57   2e-09
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.13 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    28   0.68 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.3  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   6.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   6.3  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   8.4  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    25   8.4  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   8.4  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   8.4  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 65.3 bits (152), Expect = 5e-12
 Identities = 36/85 (42%), Positives = 51/85 (60%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + +++ G    QTRQ L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VLEAGGASLESVVKTTVLLASMDDF 493
           VL   G+SL  +VK  + LA MDDF
Sbjct: 95  VLTEAGSSLNKIVKVNIFLADMDDF 119


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 27/70 (38%), Positives = 41/70 (58%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+SLE +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 TVLLASMDDF 493
            + L  +DDF
Sbjct: 74  NIFLTDIDDF 83


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 368 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 460
           C G +  T++ +D LR  ++AGG   E  +K
Sbjct: 88  CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 332  QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
            +K +RSC  K+L  T L  D+F  +  Y F     +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 365 PSVHLDPIREFQKCIRSCPLKLLDCTDLLVDIF 267
           P   L P+  FQ  +R+CPL  +    LL +IF
Sbjct: 135 PGYSLRPV--FQVRLRACPLGSVQFNPLLAEIF 165


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
           S+ +Q   F  SGQD++ FW +R+   C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 384 ASAPPQTICASRSNPRIPEMYKVLSAKIA 298
           A+ P   +CA   NP+  E+Y +   K+A
Sbjct: 26  ANIPADIVCAIDINPQANEIYNLNHGKLA 54


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 191 VFGRQCRIF*AHFYSLDVNRSIVQMTKR 108
           +FG+Q     AH+YSL+VN    ++  +
Sbjct: 111 LFGKQLTDPSAHYYSLEVNPKFAKIASK 138


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 149 SLDVNRSIVQMTKR*HYRCSDSKSMEYLHKCYFIIIIP 36
           SLDV ++++  T     RC++  +  Y  K + I  IP
Sbjct: 56  SLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIP 93


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
 Frame = +2

Query: 59  IYVGIPYSYYLNTDSVIFLSFELLTYLHL---KNKNELRRF---CTG------VRRQSFA 202
           I +G PYS  ++T SV    +EL T   L   +  N++ R+   C G      ++R  F 
Sbjct: 331 IILGFPYSCPIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390

Query: 203 QNEFSKKFE*Q*SNKNNITSPEIYQPV 283
            + F   F     + + IT+ E  +PV
Sbjct: 391 NDHFDADFNFIQIDHDPITNQETRKPV 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,996
Number of Sequences: 5004
Number of extensions: 41954
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)