Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0174
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 137 1e-33
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 92 4e-20
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 91 6e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 5e-11
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 0.68
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 1.2
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 2.7
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.6
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 3.6
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 4.8
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 4.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 137 bits (331), Expect = 1e-33
Identities = 60/81 (74%), Positives = 71/81 (87%)
Frame = +2
Query: 257 INVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSXAGNNXAKGHY 436
+NVY+NEA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQS AGN AKGHY
Sbjct: 47 LNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHY 106
Query: 437 TXGA*LVDSVLDVVRKEAEGC 499
T GA L D+VLDVVR+EAE C
Sbjct: 107 TEGAELADAVLDVVRREAEAC 127
Score = 75.4 bits (177), Expect = 5e-15
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLE 254
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHE 45
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 92.3 bits (219), Expect = 4e-20
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +2
Query: 260 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSXAGNNXAKGHYT 439
+ +++E GKYVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN A+GHYT
Sbjct: 50 STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109
Query: 440 XGA*LVDSVLDVVRKEAEGC 499
G LVD V D +R+ A+ C
Sbjct: 110 VGKELVDEVTDKIRRIADNC 129
Score = 40.7 bits (91), Expect = 1e-04
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 221
MREI+ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 91.5 bits (217), Expect = 6e-20
Identities = 36/78 (46%), Positives = 55/78 (70%)
Frame = +2
Query: 266 YYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSXAGNNXAKGHYTXG 445
+++E GK+VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN A+GHYT G
Sbjct: 56 FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVG 115
Query: 446 A*LVDSVLDVVRKEAEGC 499
++DSVL+ +R+ A+ C
Sbjct: 116 KEMIDSVLERIRRMADNC 133
Score = 38.7 bits (86), Expect = 5e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 120 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDL 245
MRE++ + GQ G QIG WE+ EHGI G + +S++
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEV 42
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.1 bits (144), Expect = 5e-11
Identities = 24/81 (29%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Frame = +2
Query: 260 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--XAGNNXAKGH 433
+V++ ++ +Y+PRA+++DLEP ++++ S +G ++ P+N + ++ AGNN A G
Sbjct: 49 DVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG- 107
Query: 434 YTXGA*LVDSVLDVVRKEAEG 496
Y+ + + ++D++ +EA+G
Sbjct: 108 YSHAERIFEDIMDMIDREADG 128
Score = 50.4 bits (115), Expect = 1e-07
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 123 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 221
REI+ +QAGQCGNQIG++FW+ + EHGI G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 0.68
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 411 PAXDCPKTKLSGRKICPNGPERTESMVPGSRS 316
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 284 LKLRYSRH*CFKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 111
++L SR C + G+ + V + +Y P S+ + + RLDVD F H T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 188 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 84
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 85 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 243
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 85 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 243
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 99 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLEASMS 266
F + S I I C + +W+V+ G+ TGA S SD L+ S+S
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD-PLKGSIS 861
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 4.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 145 AWMWTISLMIALKIWNPPNRI 83
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,560
Number of Sequences: 5004
Number of extensions: 40809
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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