Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0173
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...    93   3e-20
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...    93   3e-20
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   2.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   4.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.6  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   9.7  

>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 47/81 (58%), Positives = 56/81 (69%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPIXCVTTEGNSIIEIRNFLGEKYIXRXKMAPXVTVVNSPKXKX 437
           GVT+GF+YKMR VYAHFPI    TE  +++EIRNFLGE+     K  P VTV  S   K 
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 438 GLIXEGNSLEDVSSSAALIQQ 500
            +I EGNSLE+VS SAA I+Q
Sbjct: 141 EIILEGNSLENVSQSAANIKQ 161



 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 30/78 (38%), Positives = 49/78 (62%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61

Query: 202 KKELAAVRTXCSHVENMI 255
           +K  A +R+  S + NMI
Sbjct: 62  RKHNACIRSVYSIINNMI 79


>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 47/81 (58%), Positives = 56/81 (69%)
 Frame = +3

Query: 258 GVTKGFQYKMRAVYAHFPIXCVTTEGNSIIEIRNFLGEKYIXRXKMAPXVTVVNSPKXKX 437
           GVT+GF+YKMR VYAHFPI    TE  +++EIRNFLGE+     K  P VTV  S   K 
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 438 GLIXEGNSLEDVSSSAALIQQ 500
            +I EGNSLE+VS SAA I+Q
Sbjct: 141 EIIIEGNSLENVSQSAANIKQ 161



 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 32/78 (41%), Positives = 52/78 (66%)
 Frame = +1

Query: 22  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 201
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61

Query: 202 KKELAAVRTXCSHVENMI 255
           +K  A +RT  S + NMI
Sbjct: 62  RKHNACIRTAYSIINNMI 79


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/71 (28%), Positives = 25/71 (35%)
 Frame = -2

Query: 517  NLDVVDCWMRAAELETSSKELPSXISPXFXXGELTTVTXGAIFXLXMYFSPKKXRISIXE 338
            NLDV    M+  E  T +KE           GELT      I    M FS K        
Sbjct: 1047 NLDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRNGKFPA 1106

Query: 337  XPSVVTQXMGK 305
               ++   +GK
Sbjct: 1107 NKFIIFNRLGK 1117


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +1

Query: 49   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 216
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 217  AVRTXCSHVENMI 255
             + T CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +1

Query: 82   SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTXCSHVENMIK 258
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYR 1168


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 75  MDRKPVWDFDFLICYNLLHVWALF 4
           M+R P+  FDF+   N +H   LF
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,260
Number of Sequences: 5004
Number of extensions: 34725
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)