Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0173
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    95   2e-20
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   8.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 40/80 (50%), Positives = 59/80 (73%)
 Frame = +1

Query: 19  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 198
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 199 SKKELAAVRTXCSHVENMIK 258
            +KELAA+RT CSH++NMIK
Sbjct: 61  VRKELAAIRTVCSHIKNMIK 80



 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 44/84 (52%), Positives = 55/84 (65%)
 Frame = +3

Query: 255 KGVTKGFQYKMRAVYAHFPIXCVTTEGNSIIEIRNFLGEKYIXRXKMAPXVTVVNSPKXK 434
           KGVT GF+YKMR+VYAHFPI     +GN  +EIRNFLGEK + R  +   V    S   K
Sbjct: 80  KGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQK 139

Query: 435 XGLIXEGNSLEDVSSSAALIQQST 506
             ++ EGN ++ VS +AA IQQST
Sbjct: 140 DEIVVEGNDVQFVSQAAARIQQST 163


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 147 NSQVFEVPFENSAGPFNCHQTRFHMDR 67
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 194 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 75
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,679
Number of Sequences: 27780
Number of extensions: 205901
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)