Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0173
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 228 CPHGGKLLFGXEPFLN 181
           CP    +LF   PFLN
Sbjct: 383 CPESDSILFVSSPFLN 398


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 36  KSESQNPRRAYGPCEIAS 89
           KS S +PR   GPC+  S
Sbjct: 880 KSPSPSPRPLVGPCKALS 897


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 298 YTARILYWXPLVTPLSCSLHVNRXSSRRQAPF 203
           YT ++L+  P +   SC + V      +Q  F
Sbjct: 129 YTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCF 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,638
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)