Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0172
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.51
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 28 0.90
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.2
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.1
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 4.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 4.8
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 25 4.8
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 25 6.3
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 25 6.3
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 6.3
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 25 6.3
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 25 8.4
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.51
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 351 VHKLNRVFGEDKSELNWETIPDDVL 277
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 27.9 bits (59), Expect = 0.90
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 35 LFYVFSWHLCMLXDSDVPNDILEEQLYNSVVVADYDSAVEK 157
+FY S H + D +D+ E L N+ + D D AVEK
Sbjct: 573 IFYGASIHPVPTEELDENDDLQEAALENAAMFLDTDKAVEK 613
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 107 QLYNSVVVADYDSAVEKSKHLYEEKKS 187
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 367
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 296 VSQLSSDLSSPKTRLSLCTSATV 364
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 366 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQF 235
E V +H L+ F ED+ E E I DV A++PKL S +
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKLDITSEDY 2042
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 4.8
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 223 KQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMYQRDGLALTLSNDVQXDD 402
+++D+L V L +L+ + DCF + +++ ENA Y+ D ++ D
Sbjct: 926 REEDQLSRVTLLEYLKQLHPVEWDCFVKDTKILVEENA---PYENDSVSEKEGTYKSKVD 982
Query: 403 GRPAYXDG 426
P Y G
Sbjct: 983 DLPFYCIG 990
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 283 CPWSPGAKVEGVLHAVHLVVSYQFV 209
CPWS G ++G+L + + +S +FV
Sbjct: 52 CPWSIGNLLDGILSVLTIYIS-EFV 75
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 142 VVIGDDDAIVKLLLQNVVRD-VGIXQHTEMPRKDIE*L*RASSLERR 5
+V + A++KL L+NV+RD V +H + RK + L SL+R+
Sbjct: 50 LVYEETRAVLKLFLENVIRDAVTYTEHAK--RKTVTSLDVVYSLKRQ 94
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 142 VVIGDDDAIVKLLLQNVVRD-VGIXQHTEMPRKDIE*L*RASSLERR 5
+V + A++KL L+NV+RD V +H + RK + L SL+R+
Sbjct: 50 LVYEETRAVLKLFLENVIRDAVTYTEHAK--RKTVTSLDVVYSLKRQ 94
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -1
Query: 292 PGRCPWSPGAKVEGVLHAVHLVVSYQFVHDI 200
P + PW PG K+ V Y+ +H+I
Sbjct: 70 PSKIPWLPGGKINADEKLVADPSVYEMLHNI 100
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -1
Query: 142 VVIGDDDAIVKLLLQNVVRD-VGIXQHTEMPRKDIE*L*RASSLERR 5
+V + A++KL L+NV+RD V +H + RK + L SL+R+
Sbjct: 50 LVYEETRAVLKLFLENVIRDAVTYTEHAK--RKTVTSLDVVYSLKRQ 94
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +2
Query: 59 LCMLXDSDVPNDILEEQLYNSVVVADYD 142
LC+L DS V +D + Q Y ++ ++
Sbjct: 104 LCVLMDSRVQSDTIALQFYEELIAEGFE 131
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 8.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 98 LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 238
LE L + +VA S++EKSK LY+ K ++ +VV R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,559
Number of Sequences: 5004
Number of extensions: 28212
Number of successful extensions: 138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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