Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0172
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    31   0.39 
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437...    31   0.68 
06_01_0605 + 4373697-4373872,4374840-4374876,4375296-4375399,437...    29   1.6  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    29   2.1  
04_04_1212 - 31786063-31786195,31786275-31786398,31786486-317865...    28   4.8  
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     27   8.4  

>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 286 RCPWSPGAKVEGVLHAVHLVVSYQFV 209
           RC WSP   + GV  + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455


>04_04_0190 -
           23442824-23442846,23442891-23442949,23443613-23443737,
           23443767-23443901,23444195-23444301,23444488-23444566,
           23444856-23444942,23445045-23445281,23445783-23446128,
           23446486-23446694
          Length = 468

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 310 TQLGNNPGRCPWSPGAKVEGVLHAVHLVVSYQF 212
           T  G  P  CP S  AKVE      HLV++Y++
Sbjct: 411 TPFGGGPRLCPGSELAKVEAAFFLHHLVLNYRW 443


>06_01_0605 +
           4373697-4373872,4374840-4374876,4375296-4375399,
           4375942-4376137,4376385-4376451,4376895-4376998,
           4377090-4377174,4377309-4377369,4377694-4377825,
           4377924-4377993,4379261-4379413,4379583-4379694,
           4379779-4379920,4380023-4380140,4380862-4380957,
           4381061-4381189
          Length = 593

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 185 SEVITNVVNKLIRNN--KMNCMEYAFNFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTS 355
           SE I+++ N+L R+   K+ C     N  S A      I S+L S LS+  TRL  CTS
Sbjct: 343 SEFISHLANQLARHQFLKIACQLERKNIAS-AYSLLRVIESELQSYLSAVNTRLGHCTS 400


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 396 ALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQFILLFRI 217
           +L +IA   S    +  K + + GE K    W   PDD     +PK  A +  F LL  +
Sbjct: 316 SLLVIALLGSVLFGIWTKEDLMNGEMK---RWYLRPDDSTIFYDPKRAALASFFHLLTAL 372

Query: 216 SLFTTFVMTSLFFS 175
            L++ F+  SL+ S
Sbjct: 373 MLYSYFIPISLYIS 386


>04_04_1212 -
           31786063-31786195,31786275-31786398,31786486-31786597,
           31786691-31786822,31786929-31787111,31787351-31787479,
           31787618-31787788,31788142-31788244,31788628-31788737,
           31789158-31789265,31789337-31789512,31790082-31790352,
           31790524-31790738,31791042-31792574,31792665-31792728,
           31793171-31793251
          Length = 1214

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +1

Query: 172 RGEEERSHHKCREQTDTKQQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFAENAIKLMY 351
           R EEER+  +  ++   K + E++  +LQ  L  +     + + +E     A + +KL Y
Sbjct: 455 RKEEERAAMEA-DRAQAKAEVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFY 513

Query: 352 QRDGLALTLSNDVQXDDGRPAYXDG 426
            R    L  + ++    G   + DG
Sbjct: 514 NRSSRPLMHNTEIWMHGGYNNWSDG 538


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 92  DILEEQLYNSVVVADY--DSAVEKSKHLYEEKKSEVITNVVNKLIRNNK 232
           DIL E LY S  ++DY  D      ++L +  +   + N++ + ++NN+
Sbjct: 237 DILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKEYLKNNR 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,740
Number of Sequences: 37544
Number of extensions: 185882
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)