Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0172
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.81 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.81 
U41105-11|AAA82405.2|  247|Caenorhabditis elegans Hypothetical p...    29   1.4  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    29   1.4  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z77134-5|CAE17935.1|   94|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    27   7.6  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   7.6  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    27   7.6  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   7.6  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 244
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 244
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U41105-11|AAA82405.2|  247|Caenorhabditis elegans Hypothetical
           protein T02G5.2 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 59  LCMLXDSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNK 214
           LC+  +SDVP D     L+  VV  +    V  ++H+ EE+K       VN+
Sbjct: 35  LCLAPNSDVPADRFSNDLF-LVVYNNEQKLVGLTRHVLEERKYSTGMMTVNE 85


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 RGEEERSHHKCREQTDTK---QQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFA 327
           R EE+    K R QT T+   Q+ E+    L++ L+ S+D+ RDC  ++    FA
Sbjct: 41  RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 260 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 367
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +2

Query: 65  MLXDSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 211
           M+ DS + N +   +++     ADY+ A ++  H Y+    E+I + V+
Sbjct: 46  MVPDSRLQNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVH 94


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 272 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 367
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>Z77134-5|CAE17935.1|   94|Caenorhabditis elegans Hypothetical
           protein R09H10.7 protein.
          Length = 94

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 261 KLKAYSMQFILLFRISLFTTFVMT 190
           KLK YS+ F +LF + L TT +++
Sbjct: 31  KLKMYSIMFFVLFILFLITTIIVS 54


>Z81532-7|CAJ34990.1|  363|Caenorhabditis elegans Hypothetical
           protein F36F2.3b protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 108 SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 206
           SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 285 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 317


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein
            F36F2.3a protein.
          Length = 1128

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 108  SFTIASSSPITTVRLKRASIYTRRRRAKSSQMS 206
            SFT+ASS P T +R+++ S  +  +  +  + S
Sbjct: 1050 SFTVASSKPTTNIRVRQYSSSSSTKEQEDEERS 1082


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 234 ILLFRISLFTTFVMTSLFFSSYK 166
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>U00031-6|AAP68961.1|  627|Caenorhabditis elegans Hypothetical
           protein B0361.3 protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 35  LFYVFSWHLCMLXDSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITN 202
           +F  ++  LC + D+  P   LEE L    +     + VE+ K   E K    + N
Sbjct: 397 IFTDYTMRLCRMEDNSTPKVKLEEYLERIALAGQLSTIVEEYKDQTEIKNGLELKN 452


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
           AL+H+    + E K + NWE  PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
           AL+H+    + E K + NWE  PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
           AL+H+    + E K + NWE  PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 357 ALVHKLNRVFGEDKSELNWETIPD 286
           AL+H+    + E K + NWE  PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 330 FGEDKSELNWETIPDDVLGALEPKLKAYSMQFILLFRISLF-TTFVMTSLFF 178
           F E + EL W   PD + G  +   +A +   +    ++LF  T ++ S FF
Sbjct: 71  FAEPQFELRWYNKPDSLAGRFQTNAEAETTSKLAQRLLTLFLKTEMLESAFF 122


>AC084156-3|AAK68489.1| 1334|Caenorhabditis elegans Hypothetical
            protein Y46E12BL.2 protein.
          Length = 1334

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 498  LEVDLVXLPQSD*LPADSRAXLXLAVAVGRSAIVALNIIAQRQ 370
            LE  L  L +   + A+ +    + + V RS +VA NIIAQ+Q
Sbjct: 902  LEPVLSKLYELTTISAEQKTTGDIPLHVARSCLVAANIIAQKQ 944


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,864
Number of Sequences: 27780
Number of extensions: 158615
Number of successful extensions: 570
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)