Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0172
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.57 
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi...    29   1.7  
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    28   4.0  
At1g75160.1 68414.m08730 expressed protein contains Pfam profile...    27   5.3  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   5.3  
At1g59077.1 68414.m06670 hypothetical protein                          27   5.3  
At1g58766.1 68414.m06659 hypothetical protein                          27   5.3  
At5g47690.1 68418.m05887 expressed protein                             27   9.3  
At5g39090.1 68418.m04729 transferase family protein similar to a...    27   9.3  
At5g22450.1 68418.m02618 expressed protein                             27   9.3  
At4g28590.1 68417.m04089 expressed protein                             27   9.3  

>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 275 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 367
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
            to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
            thaliana]
          Length = 1505

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 408  SAIVALNIIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLKAYSMQFIL 229
            S +++L I A R S+   L  +  R FG+D   ++W++I D  L +L   LK   +  +L
Sbjct: 1269 STLLSLCIQAPRSSKGGML--RSGRSFGKDSPAVHWQSIIDG-LNSLLVTLKENHVPLVL 1325

Query: 228  LFRI-SLFTTFVMTSLFFS 175
            + +I S   +++   LF S
Sbjct: 1326 IQKIYSQTFSYINVQLFNS 1344


>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 15  KDEARYSYSMSFRGISVCXQIPTSLTTFWRSSFTIASSSPITTV-RLKRASIYTRRRRAK 191
           +D   +SY       ++   +P  L         + S SPITT+ ++  A++Y + ++ +
Sbjct: 225 EDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRR 284

Query: 192 SSQM 203
           +S++
Sbjct: 285 TSRI 288


>At1g75160.1 68414.m08730 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 395

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 362 PSRWYISLIAFSAKISLNSTGKQSRTMSLEPWSQS*RRTP 243
           P+ W++ L+    KIS  S GK +   S    SQ+ R  P
Sbjct: 187 PNLWFLELVVSGFKISAGSDGKVAWNQSSTQPSQAHRGPP 226


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 205
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 205
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 205
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 92  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIR 223
           D+LE++ Y   V+       + +  +YE ++SEV+  + +K+++
Sbjct: 734 DMLEDKRYQPAVLQCLGCIAQIAMPVYETRESEVVEFIRSKILK 777


>At5g39090.1 68418.m04729 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 448

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 41  YVFSW-HLCMLXDSDVPNDILEEQLYNSVVV---ADYDSAVEKSKHLYEEKKS 187
           ++ SW HLC   DS +P+D++    Y+  V+    + D+ V K  H   + KS
Sbjct: 175 FLKSWAHLCKHQDSSLPDDLI--PFYDRTVIKGPPEIDTKVLKIWHSIHKPKS 225


>At5g22450.1 68418.m02618 expressed protein
          Length = 1180

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 197 TNVVNKLIRNNKMNCMEYAFNFGSRAPRTSSGIVSQLSSDLSSP 328
           TNVV+ +I++++       F     +PR S G    LS   SSP
Sbjct: 412 TNVVSPVIKHSESKISGQGFATSDFSPRASPGTTGPLSVVDSSP 455


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 348 HKLNRVFGEDKSELNWETIPDD 283
           H +  V G+D SE++WE   DD
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDD 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,813,823
Number of Sequences: 28952
Number of extensions: 149752
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)