Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0171
(313 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.33
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13) 28 1.3
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1) 27 2.3
SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44) 27 3.1
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) 26 5.4
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4) 26 5.4
SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 7.2
SB_39407| Best HMM Match : TIG (HMM E-Value=0) 26 7.2
SB_40233| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-23) 25 9.5
SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08) 25 9.5
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 125 HAKYTCSFCGKDAMKRSCVGIWSCKRCK--RTVAGGAWVFSTTAAYHAD 265
HA Y CS ++ +K + + K R + WV T + YH +
Sbjct: 64 HASYLCSLKRRELLKPNIAQAYQAHHIKNWRKITSDPWVLETASGYHLE 112
>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 13 EVYQNGQTYQKGWNYWQIWHTLRCL 87
+ YQ + GW WQIW LR +
Sbjct: 644 DTYQGRPLMKYGWLKWQIWRALRLI 668
>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 38 TKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTC 142
T+ GIT T Y +S +K+V + T+ A TC
Sbjct: 19 TRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53
>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
Length = 351
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 80 GASLRKMVKKMEVTQHAKYTCSFCGK 157
G +K ++ E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 159 SLPQNEQVYFACWVTSIFLTIL 94
S P + V FA W SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154
>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -2
Query: 177 QERFIASLPQNEQVYFACWVTSIFLTILRRE 85
+++ AS + E ++ CWV S F+T + +
Sbjct: 167 RKKIAASCWEKESEFYECWVASFFITTAKTQ 197
>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
Length = 298
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 137 TCSFCGKDAMKRS 175
TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255
>SB_25773| Best HMM Match : 7tm_1 (HMM E-Value=1.68156e-44)
Length = 906
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 291 YFT*PPDSRSA**AAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYF-ACWVT 115
Y+ P + S+ A N PA + L+D + + +LPQN +++ AC V+
Sbjct: 324 YYEYSPGAASSKIIATDSNANDEPANHVQLELEDPCAVNTK-LTTLPQNSRMFILACKVS 382
Query: 114 SIFLTILRREAP 79
+ I AP
Sbjct: 383 WVVFNIAANVAP 394
>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
Length = 815
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 13 EVYQNGQTYQKGWNYWQIWHTLRCL 87
+VY+N + G WQIW LR +
Sbjct: 643 DVYRNEPLQRYGMLKWQIWRALRLI 667
>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
Length = 438
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 230 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 117
+++ LQS YK C KNV HP Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144
>SB_37102| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 618
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 92 RKMVKKMEVTQHAKYTCSFCGKDAMKRS 175
R+ VK + + + KY C C KD + S
Sbjct: 410 REQVKDLFIKEGEKYRCRLCSKDFTRLS 437
>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
Length = 1710
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 5 VSERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGK 157
+S +TK+ RT+K I GKY +++ V YT S K
Sbjct: 1245 MSSSYTKIICRTQKSHIPGKYNVSVSVGVQQCACTSHVGCSFAYTTSLTPK 1295
>SB_40233| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-23)
Length = 750
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 176 CVGIWSCKRCKRTVAGG--AWVFSTTAAYHADLLSGGYVK 289
C+G W + T G AW + T + D++ GG+ K
Sbjct: 620 CIGAWIYTNEEGTYLEGTYAWFITFTTIGYGDIVPGGHSK 659
>SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08)
Length = 298
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 176 CVGIWSCKRCKRTVAGG--AWVFSTTAAYHADLLSGGYVK 289
C+G W + T G AW + T + D++ GG+ K
Sbjct: 168 CIGAWIYTNEEGTYLEGTYAWFITFTTIGYGDIVPGGHSK 207
>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 13 EVYQNGQTYQKGWNYWQIWHTLRCL 87
+VYQ + + G WQIW LR +
Sbjct: 558 DVYQVNKLQKFGMLKWQIWRALRLI 582
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,723,404
Number of Sequences: 59808
Number of extensions: 222367
Number of successful extensions: 610
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -