Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0164
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 445 EEQVEAVTLMVARLSDSSQPRYISRVSASFTXQS 344
           ++Q  +  LMV   S +S PRY+S  + S T  S
Sbjct: 809 QQQSSSDYLMVGN-SPASSPRYLSAAATSSTSTS 841


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 299 DSF*SFLNSWSERGRERT 246
           +S+  +  +W ER R+RT
Sbjct: 54  NSYRKYRETWKERSRDRT 71


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 299 DSF*SFLNSWSERGRERT 246
           +S+  +  +W ER R+RT
Sbjct: 54  NSYRKYRETWKERSRDRT 71


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 299 DSF*SFLNSWSERGRERT 246
           +S+  +  +W ER R+RT
Sbjct: 54  NSYRKYRETWKERSRDRT 71


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 299 DSF*SFLNSWSERGRERT 246
           +S+  +  +W ER R+RT
Sbjct: 54  NSYRKYRETWKERSRDRT 71


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 297 INFRFHRTCSFSXIIRDXYVNXAETLLMYR 386
           ++FR   T + S  +R  ++N    LLM R
Sbjct: 336 VHFRSPSTHNMSPWVRQVFLNWMPRLLMMR 365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 377 DVPGLRRVRESG 412
           DVPG+RRV  +G
Sbjct: 74  DVPGVRRVLRNG 85


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 377 DVPGLRRVRESG 412
           DVPG+RRV  +G
Sbjct: 74  DVPGVRRVLRNG 85


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 377 DVPGLRRVRESGH 415
           DVPGLR+V  +G+
Sbjct: 47  DVPGLRQVLPNGN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,026
Number of Sequences: 438
Number of extensions: 1887
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)