Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0163
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   1.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   5.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 78  LIKNRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRIVIPEKAQSKVLHGEVVAVGPGARKK 257
           LI     + S  I S S  CP   S S + + + +  P++ ++ ++H       PG+ ++
Sbjct: 360 LINEMKKRYSALINSQS--CPITSSGSTDSSSQSVEDPQQVEAAIVHLIANLPSPGSDQR 417

Query: 258 METSSP 275
             T SP
Sbjct: 418 -STPSP 422


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 127 EEEPIVLLHWPFRFL 83
           EE P V +  PFRFL
Sbjct: 485 EERPDVKIFLPFRFL 499


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 469 VDMVVYFCXXLILFSC 516
           V  + +FC  L++F C
Sbjct: 62  VKCLAFFCTALVIFYC 77


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 469 VDMVVYFCXXLILFSC 516
           V  + +FC  L++F C
Sbjct: 295 VKCLAFFCTALVIFYC 310


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 469 VDMVVYFCXXLILFSC 516
           V  + +FC  L++F C
Sbjct: 295 VKCLAFFCTALVIFYC 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,870
Number of Sequences: 336
Number of extensions: 2332
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)