Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0163
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz...    45   8e-06
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.4  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   3.2  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   5.6  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   7.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.3  

>SPCC550.06c |hsp10||mitochondrial heat shock protein
           Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 104

 Score = 44.8 bits (101), Expect = 8e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%)
 Frame = +2

Query: 254 KNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 397
           K G      V+VGD+VLLP YGG+ + +   E+EY L+R+ ++LA I+
Sbjct: 58  KEGKLAQPSVAVGDRVLLPAYGGSNIKV--GEEEYSLYRDHELLAIIK 103



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +1

Query: 103 AVKRLVPLLDRVLIKRAEAITKTAGGL 183
           + K +VPLLDR+L++R +A TKTA G+
Sbjct: 7   SAKSIVPLLDRILVQRIKADTKTASGI 33


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 317  GGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANETLIWSCIFV 493
            GG+  S  N   +Y L+RE     K+E+ MM      SN    V+ C N   ++SC+FV
Sbjct: 857  GGSSNSA-NISSQYRLWRE-----KLESEMM---RVSSNDDYQVLVCENLVGLFSCVFV 906


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 224 FSV*NLGLSLLWDDNPPAVLVIASALLI 141
           FSV N+G  + +D N PA+L + S +L+
Sbjct: 340 FSVANIGAGIDFDLNDPAILNVYSHILL 367


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 142 SGHGPEEEPIVLLHWPFRFLINRIQKRRI 56
           S + P+E  +  L WPF+ + + ++ R++
Sbjct: 7   SKNSPKEATVPELDWPFKLIKSHLETRKL 35


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -3

Query: 471 NVSFAHATTKLTELESHVKATIIQFSIFASMSDSLKR*YSFSSFSRL 331
           N S     T++ ++ SH+ ++I ++S+++ + + L   +SF     +
Sbjct: 62  NDSQPQTLTRIHDITSHLPSSIEEYSVYSLLHERLWSLHSFEDIHEI 108


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 72  ILLIKNRNGQCSKTIGSSSGPC 137
           +L +KNRN Q    + S  GPC
Sbjct: 507 VLYLKNRNFQTGNEVMSILGPC 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,444
Number of Sequences: 5004
Number of extensions: 37882
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)