Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0163
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061 54 6e-08
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413 44 1e-04
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 37 0.012
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494... 36 0.021
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341... 33 0.20
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341... 32 0.26
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 29 1.8
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 2.4
09_02_0448 - 9458463-9459752 28 4.3
10_02_0036 + 4434003-4434092,4436135-4436233,4437794-4437871,443... 28 5.6
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 28 5.6
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217 27 7.5
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 27 9.9
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 27 9.9
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 9.9
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 27 9.9
>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
Length = 98
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/47 (59%), Positives = 32/47 (68%)
Frame = +2
Query: 254 KNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 394
K+G IPV + GD VLLPEYGG +V L EKEY LFRE DIL +
Sbjct: 51 KDGKLIPVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 109 KRLVPLLDRVLIKRAEAITKTAGGL 183
+RL+P L+RVL+++ K+AGG+
Sbjct: 3 RRLIPSLNRVLVEKLVQPKKSAGGI 27
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPGARKK 257
I++PE ++ ++ G+VVAVGPG R K
Sbjct: 27 ILLPETSK-QLNSGKVVAVGPGERDK 51
>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
Length = 126
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +2
Query: 254 KNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEY 358
++G IPV + GD VLLPEYGGT+V L EKEY
Sbjct: 90 RDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 103 AVKRLVPLLDRVLIKRAEAITKTAGGL 183
A +RL+P ++RVL+++ K+AGG+
Sbjct: 2 AARRLIPSMNRVLVEKLLQPNKSAGGI 28
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/26 (76%), Positives = 20/26 (76%)
Frame = +1
Query: 106 VKRLVPLLDRVLIKRAEAITKTAGGL 183
VK L PL DRVLIK AEA KTAGGL
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGL 175
>06_01_0676 +
4945361-4945531,4945632-4945811,4947145-4947300,
4947460-4947537,4964041-4964214
Length = 252
Score = 35.9 bits (79), Expect = 0.021
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +1
Query: 106 VKRLVPLLDRVLIKRAEAITKTAGGL 183
VK + PL DRVLIK AEA KTAGGL
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGL 181
Score = 30.7 bits (66), Expect = 0.80
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPG---ARKKMETS 269
I++P AQSK GEVVAVG G KK+E S
Sbjct: 83 ILLPSTAQSKPQGGEVVAVGEGRTIGDKKVEVS 115
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 115 LVPLLDRVLIKRAEAITKTAGGL 183
L PL DRVL+K A KT GG+
Sbjct: 61 LKPLGDRVLVKLGAAEEKTVGGI 83
>02_05_0964 -
33133516-33133689,33133780-33133857,33133997-33134152,
33134685-33134864,33135516-33135695
Length = 255
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +1
Query: 109 KRLVPLLDRVLIKRAEAITKTAGGL 183
K + PL DRVLIK AEA KT GGL
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGL 184
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 254 KNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 388
+ G IP+ VS G VL +Y G++ +D Y + R SD++A
Sbjct: 209 EEGKRIPLSVSAGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 180 IVIPEKAQSKVLHGEVVAVGPG 245
I++P AQSK GEVVA+G G
Sbjct: 86 ILLPSAAQSKPQGGEVVAIGEG 107
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 115 LVPLLDRVLIKRAEAITKTAGGL 183
L PL DRVL+K A KT GG+
Sbjct: 64 LKPLADRVLVKIKSAEQKTTGGI 86
>10_08_0968 +
21933627-21933785,21933893-21933943,21934094-21934129,
21935011-21935076,21935163-21935210,21936424-21936453,
21936651-21936719
Length = 152
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 278 QVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 397
+V G KVL + +V L DEK H F RESD+LA +E
Sbjct: 114 EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 179 DCHPREGSIQGFTRRSSSGRSWSPKKNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKE 355
D PRE G + S+ SW+ K+ DF+ + GDK +L ++ + L+ ++E
Sbjct: 655 DHRPRESESVGTSTSSAEETSWASKELLDFV-ANMKNGDKSVLSQFEVQSLLLDYIKRE 712
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 84 KNRNGQCSKTIGSSSGPCP 140
K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253
>09_02_0448 - 9458463-9459752
Length = 429
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 197 GSIQGFTRRSSSGRSWSPKKN 259
G ++ F RR SG +W P+KN
Sbjct: 309 GDLKVFLRRDGSGDAWEPEKN 329
>10_02_0036 +
4434003-4434092,4436135-4436233,4437794-4437871,
4438090-4438197,4438534-4438674,4438749-4438997,
4439477-4439521
Length = 269
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 188 PREGSIQGFTRRSSSGRSWSPKKNGD 265
PR +QGFTR S+G S K G+
Sbjct: 182 PRPDLVQGFTRNGSAGSSKDQKDGGN 207
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 200 SIQGFTRRSSSGRSWSPKKNGDFIPVQVSVGDKVLLPE----YGGTKVSLEND 346
S +G R R P K+GD + V+ +V ++L+PE Y T +SL D
Sbjct: 117 SARGVHRICVRVRDAEPGKDGDDVAVEAAVPSEMLMPETDLGYKVTHLSLNTD 169
>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
Length = 443
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 305 LPEYGGTKVSLENDEKEYHLFRESDILA 388
+P+ LE +EKE+HLF S+ LA
Sbjct: 393 VPDTSSVMHDLEENEKEHHLFLHSERLA 420
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 336 RLTLVPPYSGRRTLSPTLT*TGMKSP 259
R +V PY+ RR++ P + +G+K P
Sbjct: 91 RFLIVSPYAARRSIMPKIKTSGVKYP 116
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 305 LPEYGGTKVSLENDEKEYHLFRESDILA 388
+P+ LE EKE+HLF S+ LA
Sbjct: 678 VPDTSSVMHDLEESEKEHHLFLHSERLA 705
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 141 QDTVQKRNQSFYCIGHFDF*LTEFKSEEYEHDERCS 34
Q+T++++ SF+ + +F L E+K + YE E C+
Sbjct: 585 QETLEEKFGSFWTVIAANF-LNEYKKQHYEFKEDCN 619
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 117 GSSSGPCPDQKS*SYNQNCRRIVIPEKAQSKVLHGEVVAVGPGARKK-METSSPFK 281
G + PC +Q R +++PE++ ++HG V GAR++ M + PF+
Sbjct: 44 GEDTAPCGEQ---------RLVLLPERSVHALVHGLAEPVQHGARRRVMSCTFPFR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,653,431
Number of Sequences: 37544
Number of extensions: 228666
Number of successful extensions: 618
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -