Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0163
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)            33   0.12 
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.4  
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)                 28   5.8  

>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
          Length = 306

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 188 PREGSIQGFTRRSSSGRSWSPKKNGDFIPVQVSVGDKVLLPEYGGTKVSLEN 343
           PREG      R     ++ SP++ G  +P+++   D+ L P  GG+ V + N
Sbjct: 10  PREGGSIVPIRIPYLDKALSPREGGSIVPIRIPYLDEALSPREGGSIVPIRN 61



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 236 RSWSPKKNGDFIPVQVSVGDKVLLPEYGGTKVSL 337
           ++ SP++ G  +P+++   DK L P  GG+ V +
Sbjct: 6   KALSPREGGSIVPIRIPYLDKALSPREGGSIVPI 39


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 492 TKIHDHINVSFAHATTKLTELESHVKATII 403
           T+IH+HI V+ AH    +T   +H+  T I
Sbjct: 264 TRIHNHIMVTRAHNHNMVTRAHNHIMVTRI 293



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 492 TKIHDHINVSFAHATTKLTELESHVKATII 403
           T+IH+HI V+ AH    +T   +H+  T I
Sbjct: 21  TRIHNHIMVTRAHNHIMVTRAHNHIMVTRI 50


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 115 IVLLHWPFRFLI 80
           IVLLHWP+RFL+
Sbjct: 177 IVLLHWPWRFLL 188


>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 519 YATE*DQXXTKIHDHINVSFAHATTKLTEL-ESHVKAT 409
           +AT      T  H H+  S+AHAT+    +  SH  AT
Sbjct: 259 HATSSFAHVTSSHAHVTTSYAHATSSYAHVTSSHAHAT 296


>SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)
          Length = 370

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 439 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFW 308
           NR  + C  YH ++ N  +Y+ +     + +I+     + AV W
Sbjct: 97  NRAFVVCSLYHVTLLNIDRYIAIKNTFHYPVIVTNQRITIAVVW 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,828
Number of Sequences: 59808
Number of extensions: 267703
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)