Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0163
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...    55   3e-08
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   1.7  
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical p...    27   6.7  
AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 25/44 (56%), Positives = 34/44 (77%)
 Frame = +2

Query: 254 KNGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 385
           + G+ + + V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 63  EKGELVALTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104



 Score = 34.7 bits (76), Expect = 0.044
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 97  ANAVKRLVPLLDRVLIKRAEAITKTAGGL 183
           +N +K   PL DRVL++R  A TKT GG+
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGI 38



 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 180 IVIPEKAQSKVLHGEVVAVGPGARKK 257
           I++PEK+Q KVL   VV+ G G R +
Sbjct: 38  IMLPEKSQGKVLEATVVSAGAGLRNE 63


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 394 NFRQ-YVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVS 260
           NF + Y+RLS   I  L++   + +  V  K   + H N +G ++S
Sbjct: 288 NFEKWYLRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDIS 333


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 397 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 302
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


>Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 439 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 269
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220

Query: 268 EVS 260
           E++
Sbjct: 221 EIA 223


>Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 439 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 269
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214

Query: 268 EVS 260
           E++
Sbjct: 215 EIA 217


>Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 439 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 269
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220

Query: 268 EVS 260
           E++
Sbjct: 221 EIA 223


>Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -2

Query: 439 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 269
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214

Query: 268 EVS 260
           E++
Sbjct: 215 EIA 217


>AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical
           protein C04E12.10 protein.
          Length = 658

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -2

Query: 328 FSTAVFWKKNFITHTNLNGDEVSIFFRAPGPTATTSP 218
           FS  VFW+    T T L    VS     PG   TTSP
Sbjct: 419 FSIEVFWQNT--TETTLATTAVSEMTTTPGTIETTSP 453


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -2

Query: 472 QRF-ICARYN*TNRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNF 296
           QRF IC      N ++IT  + +  VF    Y  L E++IFFL+  + + +  VF+  ++
Sbjct: 129 QRFCICFHPRSENYLKITHGTLNWIVFIGYAYFLL-EKVIFFLMCLRDFEAAKVFYMFSY 187

Query: 295 IT 290
           I+
Sbjct: 188 IS 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,460
Number of Sequences: 27780
Number of extensions: 213146
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)