Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0162
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    67   1e-12
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.4  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   7.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    24   7.6  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.6  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    24   10.0 

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 66.9 bits (156), Expect = 1e-12
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +1

Query: 94  ALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFLFAFIYI 273
           A  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGASFF F F+Y+
Sbjct: 37  ACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFF-FIFLYL 95



 Score = 35.1 bits (77), Expect = 0.004
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +3

Query: 249 FFICIYLHIGRGIYYESF 302
           FFI +YLHIGRG+YY S+
Sbjct: 89  FFIFLYLHIGRGLYYGSY 106


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 118 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGASFFLFAFIYISDEXF 288
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLH   A  FLF+   +S +  
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLH---AFVFLFSHTLVSSQFR 57

Query: 289 TMNL 300
            + L
Sbjct: 58  RLKL 61


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 180 KLYLPKCKLWLNNSNITC*WSFIFFICIYLHIGRGIYYESFNLK 311
           + Y  KCKLW ++ N +   S+    C    IGRG+  + F+ K
Sbjct: 206 RYYCNKCKLWDDDPNKS---SYHCDDCGICRIGRGLGDDYFHCK 246


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 177  SIKSYFNICCVIYC*K*SSNN 115
            S  +Y+  CC +Y  K SSNN
Sbjct: 1993 SSHTYYASCCFLYLFKSSSNN 2013


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 102 SNNSNYYWIIFNNILHSKY*N--SFL*SKLYLPKCK 203
           SNN+NYY+ + ++ L+        F    L+L +CK
Sbjct: 104 SNNTNYYFEVSHDALYGALDRFAQFFIDPLFLEECK 139


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 252 FICIYLHIGRGIYYESFNLKY 314
           ++ I +H+G+ +  + FNL Y
Sbjct: 54  YLSIIMHVGQSLLLQKFNLGY 74


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 167 AISIFAV*YIVKNNPVXXXXIRHKASR 87
           A+SIF V YI+   P      R KASR
Sbjct: 101 AVSIFYVLYILVETPSVVLVKRIKASR 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,679
Number of Sequences: 5004
Number of extensions: 23180
Number of successful extensions: 51
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)