Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0158
         (397 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    47   2e-04
UniRef50_Q63TE4 Cluster: Sensor protein; n=17; Burkholderia|Rep:...    31   6.1  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 46.8 bits (106), Expect = 2e-04
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +2

Query: 113 IYXTXGLLTPLVAPVLGFSSAGIAAG 190
           IY T GLLTP+VAP+LGF SAGIAAG
Sbjct: 17  IYGTGGLLTPIVAPMLGFGSAGIAAG 42



 Score = 41.9 bits (94), Expect = 0.004
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = +3

Query: 192 STAAAAQAYYGNLVAGSIVSQ 254
           STAAAAQAYYGN+VAGS++SQ
Sbjct: 43  STAAAAQAYYGNVVAGSVISQ 63


>UniRef50_Q63TE4 Cluster: Sensor protein; n=17; Burkholderia|Rep:
           Sensor protein - Burkholderia pseudomallei (Pseudomonas
           pseudomallei)
          Length = 693

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -3

Query: 221 VVCLCSSGCAFLPLFPLS*NRAREXLMESTDP 126
           +VCLC++  AFL L  LS NR +E ++ +T+P
Sbjct: 16  LVCLCAAALAFLTLPQLS-NRMQESMLIATEP 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,328,225
Number of Sequences: 1657284
Number of extensions: 3655312
Number of successful extensions: 6922
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6921
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)