Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0156
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    28   0.30 
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   2.1  
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin...    24   4.8  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.4  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    24   6.4  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    23   8.5  

>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
 Frame = +2

Query: 59  IYVGIPYSYYLNTGSVIFLSFELLTYLHL---KDKNELRRF---CTG------VRRQSFA 202
           I +G PYS  ++T SV    +EL T   L   +  N++ R+   C G      ++R  F 
Sbjct: 331 IILGFPYSCPIDTWSVGCSLYELYTGQILFPGRTNNQMLRYMMECKGKFSHKMLKRSQFL 390

Query: 203 QNEFSKKFG*PLSDQNHITSPEIYQPV 283
            + F   F     D + IT+ E  +PV
Sbjct: 391 NDHFDADFNFIQIDHDPITNQETRKPV 417


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 213 NSFWAKLCLRTPVQNLRSSFLSFRC 139
           NS+W   CL  P+  L S+   ++C
Sbjct: 429 NSYWHPDCLNPPLATLPSNLRKWKC 453


>SPBPB21E7.04c ||SPAPB21E7.04c,
           SPAPB21E7.04c|S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 281

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 191 VFGRQCRIFGAHFYPLDVNRSIVQMTKR 108
           +FG+Q     AH+Y L+VN    ++  +
Sbjct: 111 LFGKQLTDPSAHYYSLEVNPKFAKIASK 138


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 116 TKR*HYRCSDSKSMEYLHKCYFI 48
           T R H+  S+ K++  LH+C F+
Sbjct: 39  TCRGHFLVSEPKTIPCLHRCAFL 61


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 164 GAHFYPLDVNRSIVQMTKR*HYRCSDSKSMEYLHKCYFIIIIP 36
           G     LDV ++++  T     RC++  +  Y  K + I  IP
Sbjct: 51  GKEHVSLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIP 93


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 162 SEDSALASEDKVSPKMSS--AKNSDN 233
           S D  + S+D +SP M+S  + NS+N
Sbjct: 52  SNDEPVQSQDPISPNMASNESGNSEN 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,009
Number of Sequences: 5004
Number of extensions: 25344
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)