Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0156
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361...    28   1.4  
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9...    28   1.8  
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959     26   5.6  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    26   5.6  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    25   9.7  
02_01_0775 + 5775949-5777385                                           25   9.7  

>10_01_0002 -
           34139-34234,34337-34345,34806-35048,35931-36003,
           36184-36265,36398-36580,36663-36702,36814-36886,
           37022-37290
          Length = 355

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 234 GYPNFLLNSFWAKLC 190
           G+P FLLN FW  LC
Sbjct: 209 GFPAFLLNLFWGVLC 223


>05_01_0002 -
           8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
           9802-9902,10016-10651,10820-10899,11014-11673,
           11787-12041,12154-12281,12515-12669,12735-12919,
           13020-13049,13164-13239,13371-13504,13703-13994,
           14400-14567,14647-14745,14843-15014,15103-15281
          Length = 1352

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 268 NISTSRSVQSSHFSGP 315
           NIST RSV+SSH S P
Sbjct: 816 NISTERSVESSHLSRP 831


>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
          Length = 849

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
 Frame = +2

Query: 236 LSDQNHITSPEIYQPVG----PYSPAIL 307
           +SD+N  +S +++QP+G    PY P I+
Sbjct: 394 VSDKNMTSSTDMFQPIGLVTLPYDPQIM 421


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 255 IWFWSLNGYPNFLLNSFWAKLCLRTPVQNLRSSFLSF 145
           +W W   G  NF   +  A  CL+T V  + S FL F
Sbjct: 296 LWIWRGTGNANFYFATGLAYTCLQT-VLVVESGFLPF 331


>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
            6899245-6899386,6899951-6900020,6900077-6900216,
            6900291-6900365,6901083-6904723
          Length = 1448

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 288  GPTG*YISGDVIWFWSLNGYPN 223
            GP   Y+  D +W WS   YP+
Sbjct: 1331 GPLYIYMGSDPLWLWSCVVYPH 1352


>02_01_0775 + 5775949-5777385
          Length = 478

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 98  GSVIFLSFELLTYLHLKDKNELRR 169
           GSV+++SF  ++ +  + K ELRR
Sbjct: 296 GSVVYVSFGSMSVVSRRQKEELRR 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,901,299
Number of Sequences: 37544
Number of extensions: 140184
Number of successful extensions: 292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)