Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0156
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.016
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              31   0.15 
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        27   2.5  
SB_31258| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              26   5.8  
SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)              26   5.8  
SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06)                    26   7.6  

>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 267 SGDVIWFWSLNGY---PNFLLNSFWAKLCLRTPVQNL 166
           S   +WFWSL G+    NFLL S W  L    P+ NL
Sbjct: 132 SDSKVWFWSLCGFGVFANFLLTSSWYILSRMAPLSNL 168


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 149 PLDVNRSIVQMTKR*HYRCSDSKSMEYLHKCYF--IIIIPQKSLRFSKSHR 3
           PLD +R I     +  + CS +K + Y+   +F  +I + QK++R  +S R
Sbjct: 751 PLDTDRMIYCCVLQDEFYCSPAKILHYVETVFFKKLIAVVQKTVRAKQSQR 801


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = -2

Query: 288  GPTG*YISGDVIWFWSLNGY-----PNFLLNSFWAKL 193
            G  G Y+ GD+++F   NGY     P    N  W+K+
Sbjct: 1202 GKVGRYLEGDMVYFSCYNGYFLVGIPVIKCNKSWSKV 1238


>SB_31258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -2

Query: 315 WPAKMA---GLYGPTG*YISGDVIWFWSL 238
           WP  MA   G YGPT  Y  G  +W +++
Sbjct: 9   WPYTMAQGGGTYGPTLWYKEGGYLWSYTM 37


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 194 FVFGRQCRIFGAHFYPLDVNRSIVQMTKR*HYRCSDSKSMEYLHKC 57
           F+  +Q   F   F  L+ N+++VQ+    +Y C     ++  H C
Sbjct: 77  FIKRKQSAFFEDRFANLNENKTVVQVDFSENYTCQHQDEIQSPHWC 122


>SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)
          Length = 498

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 159 SSEDSALASEDKVS-PKMSSAKNSDNH*VTKTI 254
           +S DS LAS    S PK+S+  NSD+H  +K I
Sbjct: 215 ASPDSGLASFSAGSDPKVSAPGNSDDHSPSKPI 247


>SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06)
          Length = 464

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 122 QMTKR*HYRCSDSKSMEYLHKCYFIIIIPQKSLRFSKS 9
           Q+ +  HY CS  K  EYL++   +++       FS S
Sbjct: 215 QVAQSGHYECSLGKPFEYLYRNNHLVVTDPTPPIFSTS 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,471,389
Number of Sequences: 59808
Number of extensions: 165832
Number of successful extensions: 344
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)