Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0156
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF043693-2|AAB97535.2|  351|Caenorhabditis elegans Hypothetical ...    26   5.1  
AF039720-6|AAB96700.1|  347|Caenorhabditis elegans Hypothetical ...    26   5.1  
AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    26   5.1  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    26   5.1  
AC006673-2|AAF39928.1|  300|Caenorhabditis elegans Serpentine re...    26   6.8  

>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 261 DVIWFWSLNGYPNFLLNSFWAKLCLRTPVQNLRSSFLSFRC 139
           DVI FWS  G+  F   S  A+  L TP    ++ F   RC
Sbjct: 671 DVITFWSTTGHAQFPTLSSLARRTLCTPAIAPKTQF-DARC 710


>AF043693-2|AAB97535.2|  351|Caenorhabditis elegans Hypothetical
           protein C34B2.3 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 95  TGSVIFLSFELLTYLHLKDKNELRRFC 175
           T ++  L FEL   L ++ KN+ ++FC
Sbjct: 78  TEAIKMLQFELFVLLTVEKKNQCKQFC 104


>AF039720-6|AAB96700.1|  347|Caenorhabditis elegans Hypothetical
           protein F33D11.7 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 95  TGSVIFLSFELLTYLHLKDKNELRRFC 175
           T ++  L FEL   L ++ KN+ ++FC
Sbjct: 77  TEAIKMLQFELFVLLTVEKKNQCKQFC 103


>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 258 VIWFWSLNGYPNFLLNSFWAKLCL--RTPVQNLRSSFLSFR 142
           ++WF+   G  +FLLN+F   L L     + N R   L F+
Sbjct: 11  LVWFYHCMGTISFLLNTFTIYLALFKSDTIDNFRYCILVFQ 51


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 258 VIWFWSLNGYPNFLLNSFWAKLCL--RTPVQNLRSSFLSFR 142
           ++WF+   G  +FLLN+F   L L     + N R   L F+
Sbjct: 11  LVWFYHCMGTISFLLNTFTIYLALFKSDTIDNFRYCILVFQ 51


>AC006673-2|AAF39928.1|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein62 protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 86  YLNTGSVIFLSFELLTYLHLKDKNELRRF 172
           +L TGSV    +E+L +++ +DK++   F
Sbjct: 132 WLFTGSVAIYLYEILCHIYYEDKSDFLTF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,256,255
Number of Sequences: 27780
Number of extensions: 138174
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)