Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0156
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 206 FGRNFVFGRQCRIFGAHFYPLDVNRSIVQM 117
           +G  F     C +   H+YPLD     V++
Sbjct: 151 YGMRFTTTLAC-MMDLHYYPLDSQNCTVEI 179


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 101 SVIFLSFELLTYLHLKDKNELRRFCTGVRRQSFAQNE 211
           +VIF+S +   +  +K KN+  R       Q  AQ E
Sbjct: 767 AVIFISVQAPPHFEIKLKNQTARRGEPAVLQCEAQGE 803


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,170
Number of Sequences: 438
Number of extensions: 1899
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)