Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0156
         (319 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33350.1 68415.m04088 hypothetical protein                          27   2.1  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    27   2.7  
At1g10950.1 68414.m01257 endomembrane protein 70, putative             27   3.6  

>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 170 FCTGVRRQSFAQNEFSKKFG*PLSDQNHITSPEIYQPVGP 289
           FC    ++ F   +  K  G    +Q+H+ +P+ +  +GP
Sbjct: 280 FCPDSIKRMFNPEDLQKALGGGAENQSHLVTPQAHPALGP 319


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 164 GAHFYPLDVNRSIVQMTKR*HYRCSDSKSMEYLHKC 57
           G+ F  L  N+S + + +R H     ++ M YLH C
Sbjct: 567 GSLFRLLQRNKSKLDLRRRIHMASDIARGMNYLHHC 602


>At1g10950.1 68414.m01257 endomembrane protein 70, putative
          Length = 589

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 314 GPLKWLDCTDLLVDIFPEMLYGFGHLM-VIRIF 219
           G   W+ C  L   +FP + +G G L+  I IF
Sbjct: 351 GGKHWIKCMVLTASLFPFLCFGIGFLLNTIAIF 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,690,441
Number of Sequences: 28952
Number of extensions: 123085
Number of successful extensions: 247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)