Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0154
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    28   0.90 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.8  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.8  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 90  VLFMN*SF-ELINKRSVLEIVYSSKLQK*LSYYFALTLNLNKARL 221
           +LF+N    E +  R  LE  Y+  L K  SY+  L+LN++  +L
Sbjct: 270 ILFINNRLVESVELRHALEETYAKYLHKGASYFVYLSLNMSPEQL 314


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 258 YTTLLVLIFGIKIIWLYLN*V*EQSSNLIIFEV*KSTQFLKHCVCLLVQNFN 103
           Y+     I    II +YL+    ++ N   F +  S  F KHCV L  +NF+
Sbjct: 616 YSQFYFCILSSAIIKMYLDFEFNENFNATTFGLLSS--FTKHCVWLKFRNFD 665


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 538 CYLESSVNFXKNWNAKVELPTAXITKPWRCT 446
           C++  S+ F  NW+A  ++  A +++ W  T
Sbjct: 217 CFIPYSILFSMNWSAMFQVVGAYLSQIWIIT 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,209
Number of Sequences: 5004
Number of extensions: 45676
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)