Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0154
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11378| Best HMM Match : Strep_SA_rep (HMM E-Value=2)                27   8.7  

>SB_11378| Best HMM Match : Strep_SA_rep (HMM E-Value=2)
          Length = 319

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -1

Query: 574 SSNWLETGQSDRCYLESSVNFXKNWNAKVELPTAXITKPWRCTLPIGRLAVVALHC 407
           S+ WL+TG    C     V      +  + LP    T  WR    I  L  +A+HC
Sbjct: 104 SAKWLQTGCGVLCTYVEGVAAAAKRDKSMTLPEQTATAFWRL---IHLLRCIAVHC 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,702,923
Number of Sequences: 59808
Number of extensions: 307533
Number of successful extensions: 637
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)