Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0154
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine re...    28   5.8  
AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine re...    28   5.8  
AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 217 DYFYAENEYQ*CGVIKMIGKYLDVSVGAVCYNTDKV 324
           D FY E  Y  CG +  +  Y DV VGAVC   D +
Sbjct: 123 DKFYVEARY--CGELGRLAYYNDVVVGAVCCRIDDI 156


>AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 364 VTIILSMXSKCGTASSEEQRLLTYQWVE 447
           + +ILSM  +  T   EE +LLT+ W E
Sbjct: 64  IVVILSMLYRAITFLGEEGKLLTFNWSE 91


>AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform a protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 364 VTIILSMXSKCGTASSEEQRLLTYQWVE 447
           + +ILSM  +  T   EE +LLT+ W E
Sbjct: 64  IVVILSMLYRAITFLGEEGKLLTFNWSE 91


>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 559 ETGQSDRCY-LESSVNFXKNWNAKVELPTAXITKPW 455
           +T  SDRC+  ++ +NF K WN    L +    K W
Sbjct: 798 DTIPSDRCHGAKNMINFLKRWNQFAILDSIRKLKKW 833


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 559 ETGQSDRCY-LESSVNFXKNWNAKVELPTAXITKPW 455
           +T  SDRC+  ++ +NF K WN    L +    K W
Sbjct: 798 DTIPSDRCHGAKNMINFLKRWNQFAILDSIRKLKKW 833


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,263
Number of Sequences: 27780
Number of extensions: 252370
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)