Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0154
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61880.1 68416.m06950 cytochrome P450, putative similar to cy...    28   5.4  
At2g34750.1 68415.m04267 RNA polymerase I specific transcription...    27   7.2  
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r...    27   9.5  

>At3g61880.1 68416.m06950 cytochrome P450, putative similar to
           cytochrome p450 SP:O48927 from [Arabidopsis thaliana]
          Length = 534

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 97  NNTLNMYIFMTLIYGMNLNYIMCIIYGDEYE 5
           +NT  +     LI   +LN +MC ++G EYE
Sbjct: 197 SNTKGLCFARDLIKTASLNNMMCSVFGKEYE 227


>At2g34750.1 68415.m04267 RNA polymerase I specific transcription
           initiation factor RRN3 family protein contains Pfam
           PF05327: RNA polymerase I specific transcription
           initiation factor RRN3;  similar to RRN3 (GI:7670100)
           [Homo sapiens] similar to RNA polymerase I specific
           transcription initiation factor RRN3 (Swiss-Prot:P36070)
           [Saccharomyces cerevisiae]
          Length = 613

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -2

Query: 270 DHLNYTTLLVLIFGIKIIWLYLN*V*EQSSNLIIFEV*KSTQFLKHCVCLLVQNF 106
           D L++  LL  +F +K+ W +   V +   NL+I     S ++L  C+ +LV NF
Sbjct: 87  DVLHHQKLLSALFRMKL-WDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSNF 140


>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 298 AVCYNTDKVPTAVLENKNVEGFVTIILSMXSKCGTASSEEQRLLTYQWVEYISMV 462
           AV +    + T     K + G+VT ++ +   C +     + L   QW+ Y S++
Sbjct: 520 AVQFTCRNLETKYTNRKLLLGYVTSLMIIERICMSEDERRRNLQEDQWIRYASIL 574


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,764,619
Number of Sequences: 28952
Number of extensions: 222034
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)