Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0153
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 56 4e-09
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 49 5e-07
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 31 0.17
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 28 0.90
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 28 1.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 3.6
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.4
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 8.4
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 8.4
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 56.0 bits (129), Expect = 4e-09
Identities = 33/95 (34%), Positives = 51/95 (53%)
Frame = +2
Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRH 418
S K I SP++ GPY+QAI A+ +Y SG + + + +++ G QTRQ L NL+
Sbjct: 37 STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94
Query: 419 VLEAGGASLESVVKTTVLLG*HGRLPNFQQVYADI 523
VL G+SL +VK + L +VY ++
Sbjct: 95 VLTEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEV 129
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 284 GPYSQAILADKTLYISGILGLDRDAQMVCGGAEAQTRQALDNLRHVLEAGGASLESVVKT 463
GPY+QA+ + ++ SG + +D V G + QTR ++NL VL G+SLE +VK
Sbjct: 15 GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73
Query: 464 TVLL 475
+ L
Sbjct: 74 NIFL 77
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 281 VGPYSQAILADKTLYISGILGL 346
+GPYSQ+I A+ ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 368 CGGAEAQTRQALDNLRHVLEAGGASLESVVK 460
C G + T++ +D LR ++AGG E +K
Sbjct: 88 CRGNQLMTQEEIDELRANIKAGGLRAEEAIK 118
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 27.9 bits (59), Expect = 1.2
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +1
Query: 259 ISGNISTSRSVQSSNFSGQDLIHFWNSRIGSRCTDGLRWC*SADPSGSGQSATCT*---S 429
I+ IS R++ + + D + F+ SRIG+ + A S + + T T +
Sbjct: 256 ITPEISAIRTILINKNTHPDDLQFFLSRIGTMLMN------LAGDSLAYEKKTITLHNGN 309
Query: 430 WWRFVGVGRENYCFVGLAWTTSKLSTSLCRYFPKAC 537
W + + +E C V + + L T+LCR FP C
Sbjct: 310 QWEGLQMAKE-LCGVSVLRSGGTLETALCRQFPTVC 344
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 439 FVGVGRENYCFVGLAWTTSKLSTSLC 516
FV + R N C+ G T +++S+SLC
Sbjct: 71 FVAI-RNNQCYCGSTLTATEVSSSLC 95
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 332 QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
+K +RSC K+L T L D+F + Y F +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 365 PSVHLDPIREFQKCIRSCPLKLLDCTDLLVDIF 267
P L P+ FQ +R+CPL + LL +IF
Sbjct: 135 PGYSLRPV--FQVRLRACPLGSVQFNPLLAEIF 165
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
S+ +Q F SGQD++ FW +R+ C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,391
Number of Sequences: 5004
Number of extensions: 50850
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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